RetrogeneDB ID: | retro_sscr_741 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 3:112876633..112877088(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL21 | ||
Ensembl ID: | ENSSSCG00000009303 | ||
Aliases: | None | ||
Description: | ribosomal protein L21 [Source:HGNC Symbol;Acc:10313] |
Percent Identity: | 64.42 % |
Parental protein coverage: | 98.75 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | NTKGKRRGTRYMFSRPFRKHGVVPLATYMRIYKKGDIVDIKG-MGTVQKGMPHKCYHGKTGRVYNV-TQH |
NT.G..RGT.Y.F.R..RKH.VVPLA.Y..I..KGDIV.IK..M.TV.KG.PHK.YHGKTG..YN..TQH | |
Retrocopy | NTEGRKRGTCYTFFRSLRKHRVVPLAIYV*I*DKGDIVNIKK<MSTV*KGVPHKYYHGKTGSIYNI<TQH |
Parental | AVGIVVNKQVKGKI-LAKRINVRIEHIKHSKSRDSFLKRVK-ENDQKKKEAKEKGTWVQL-KRQPAPPRE |
A.GI.VN...KGKI.L....NV...HIKHSKS...FLK..K.E.DQKKKEAK.K.TWVQL...QP...RE | |
Retrocopy | AIGIIVN---KGKI>LPRAFNV---HIKHSKSQGNFLKHMK>EYDQKKKEAKDKVTWVQL<EHQPVLLRE |
Parental | AHFVRTNGKEPELLEPIPYEFMA |
AHFVR..GKE.ELL.PIPY.FMA | |
Retrocopy | AHFVRISGKELELLKPIPYKFMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 78 .71 RPM |
SRP014902_testis | 0 .71 RPM | 260 .12 RPM |
SRP018288_heart | 0 .00 RPM | 401 .86 RPM |
SRP018288_kidney | 0 .00 RPM | 331 .87 RPM |
SRP018288_liver | 0 .00 RPM | 309 .27 RPM |
SRP018288_lung | 0 .00 RPM | 406 .69 RPM |
SRP018856_adipose | 0 .00 RPM | 620 .58 RPM |
SRP035408_brain | 0 .00 RPM | 438 .42 RPM |
SRP035408_liver | 0 .00 RPM | 389 .99 RPM |