RetrogeneDB ID: | retro_tbel_1344 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_4457:146579..146912(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTBEG00000006795 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHC | ||
Ensembl ID: | ENSTBEG00000011741 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase C [Source:HGNC Symbol;Acc:6544] |
Percent Identity: | 52.25 % |
Parental protein coverage: | 56.35 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | LFFSTSKITSGKDYSISANSKLVIVTAGARQQEGESRLALVQRNVNIMKSIIPTIVHYSPECKMLIVSNP |
.F.....I...KDY...ANS.LVI.TAG..Q..GE..L.LVQ.NV.I.K..I..I..Y...CK...VSN. | |
Retrocopy | VFMKMPNIICSKDYLVTANSNLVIITAGSCQEKGETCLNLVQQNVAIFKLMISSIIQYILHCKLIVVSNA |
Parental | VDILTYVVWKLSGLPVTRVIGSGCNLDSARFRYLIGEKLGV |
VDILT.V.WKLS.......IGSGCNLD.A.F..L.G.KLG. | |
Retrocopy | VDILTHVAWKLSAFLKNYIIGSGCNLDTAHFQFLTGQKLGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Rattus norvegicus | ENSRNOG00000013103 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011741 | 24 retrocopies |
retro_tbel_1130, retro_tbel_1300, retro_tbel_1344 , retro_tbel_1657, retro_tbel_2072, retro_tbel_2125, retro_tbel_2227, retro_tbel_2254, retro_tbel_2367, retro_tbel_2433, retro_tbel_2640, retro_tbel_2775, retro_tbel_2859, retro_tbel_2877, retro_tbel_2960, retro_tbel_3042, retro_tbel_3188, retro_tbel_3468, retro_tbel_3683, retro_tbel_4189, retro_tbel_4323, retro_tbel_4557, retro_tbel_499, retro_tbel_676,
|
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |