RetrogeneDB ID: | retro_tbel_1657 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5398:104668..105250(-) | ||
Located in intron of: | ENSTBEG00000003634 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHC | ||
Ensembl ID: | ENSTBEG00000011741 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase C [Source:HGNC Symbol;Acc:6544] |
Percent Identity: | 64.29 % |
Parental protein coverage: | 98.98 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MSSVKEQLIENLTEEDKVS-HSKITIVGAGAVGMACAISILLKDLADELALVDVATDKLKGEMMDLQHGS |
M...K..LI....E........KIT.VG.G.VGMACAISIL.K.LAD.LAL.D.....LK..MMDLQHGS | |
Retrocopy | MATLKDKLIAPVAEGEATDPNNKITVVGVGQVGMACAISILGKSLADALALMDLVEGTLKRKMMDLQHGS |
Parental | LFFSTSKITSGKDYSISANSKLVIVTAGARQQEGESRLALVQRNVNIMKSIIPTIVHYSPECKMLIVSNP |
LF..T..I...KDYS..ANSK.V.VTAG...QEGES.L.LVQRN.N..K.IIP.IV.YSP.C....VSNP | |
Retrocopy | LF-QTPEIVADKDYSVTANSKIV-VTAGVHHQEGESHLNLVQRNINVFKFIIPQIVKYSPDCIIIVVSNP |
Parental | VDILTYVVWKLSGLPVTRVIGSGCNLDSARFRYLIGEKLGVHATSCHGWIIGEHGD |
VDILTYV.WKLSG.P...VI.SGCNLDSARF.YL..EKLGVH.TSCHGWI.GEHG. | |
Retrocopy | VDILTYVTWKLSGQPKHCVIASGCNLDSARFHYLMAEKLGVHPTSCHGWILGEHGN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Rattus norvegicus | ENSRNOG00000013103 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011741 | 24 retrocopies |
retro_tbel_1130, retro_tbel_1300, retro_tbel_1344, retro_tbel_1657 , retro_tbel_2072, retro_tbel_2125, retro_tbel_2227, retro_tbel_2254, retro_tbel_2367, retro_tbel_2433, retro_tbel_2640, retro_tbel_2775, retro_tbel_2859, retro_tbel_2877, retro_tbel_2960, retro_tbel_3042, retro_tbel_3188, retro_tbel_3468, retro_tbel_3683, retro_tbel_4189, retro_tbel_4323, retro_tbel_4557, retro_tbel_499, retro_tbel_676,
|
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |