RetrogeneDB ID: | retro_tbel_2877 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_122066:335466..335771(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHC | ||
Ensembl ID: | ENSTBEG00000011741 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase C [Source:HGNC Symbol;Acc:6544] |
Percent Identity: | 56.31 % |
Parental protein coverage: | 51.27 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MSSVKEQLIENLTEE-DKVSHSKITIVGAGAVGMACAISILLKDLADELALVDVATDKLKGEMMDLQHGS |
M...K...I....EE...V...KI..VG.G.V.MACAISIL.K.LA.E.ALVDV..DKLKGEMMDLQ.GS | |
Retrocopy | MATLKDKPIAPVAEE*ATVPNNKIPVVGVGQVCMACAISILGKPLAEERALVDVLKDKLKGEMMDLQRGS |
Parental | LFFSTSKITSGKDYSISANSKLV-IVTAGARQQ |
LF..T.K....KDYS...NSK.V..VTAG.... | |
Retrocopy | LFLHTPKFVADKDYSVTTNSKIV<GVTAGVNKR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Rattus norvegicus | ENSRNOG00000013103 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000011741 | 24 retrocopies |
retro_tbel_1130, retro_tbel_1300, retro_tbel_1344, retro_tbel_1657, retro_tbel_2072, retro_tbel_2125, retro_tbel_2227, retro_tbel_2254, retro_tbel_2367, retro_tbel_2433, retro_tbel_2640, retro_tbel_2775, retro_tbel_2859, retro_tbel_2877 , retro_tbel_2960, retro_tbel_3042, retro_tbel_3188, retro_tbel_3468, retro_tbel_3683, retro_tbel_4189, retro_tbel_4323, retro_tbel_4557, retro_tbel_499, retro_tbel_676,
|
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |