Parental gene: | Ldhc, ENSRNOG00000013103 |
| Aliases: | Ldhc, Ldh3 |
| Description: | L-lactate dehydrogenase C chain [Source:RefSeq peptide;Acc:NP_058962] |
| Organism: | Rat (Rattus norvegicus) |
| Coordinates: | 1:103990390..104006578(+) |
>ENSRNOG00000013103
ATGTCCACTGTCAAGGAGCAGCTAATTCAGAACCTAGCTCCAGATGAAAAACAATCCCGGTGTAAGATCACTGTGGTCGG
AGTTGGAAATGTGGGCATGGCGTGTGCCATTAGTATTTTACTGAAGGGTCTGGCTGATGAACTTGCCCTTGTTGATGCTG
ATGAGAACAAACTGAAGGGAGAGGCACTGGATCTTCTGCATGGCAGCCTTTTCCTCAGCACTCCAAAAATCGTCTTTGGA
AAAGATTACAGTGTATCTGCCAACTCCAAACTGGTTATTATCACTGCTGGTGCAAGAATGGTGAGTGGAGAATCTCGTCT
TGCCCTGCTCCAACGTAATGTCACTATCATGAAAGCCATCGTTCCCGGCGTAATCCAAAACAGTCCGGACTGTAAAATAA
TGATTGTCACAAACCCAGTCGATATTTTGACATACGTGGTTTGGAAGATAAGTGGCCTCCCTGTAAGCAGTGTGATTGGA
AGTGGCTGTAACCTAGACTCCGCTCGTTTCCGTTACCTGATTGGAGAGAAGCTGGGTGTCAACCCTTCGAGCTGCCATGG
CTGGGTTCTTGGAGAACATGGGGACTCCAGTGTGCCCATATGGAGTGGTGTGAACATTGCTGGCGTAACTCTGAAGTCAC
TGAACCCAGCAATAGGATCCGACTCCGATAAGGAACAGTGGAAAACCGTTCACAAGCAGGTGGTGGATGGTGGCTATGAG
GTCCTTAACCTGAAGGGCTATACCTCTTGGGCCATTGCGCTGTCTGTGACTGATATCGCTGCATCAATCTTGAAGAATCT
TAAGAGGGTGCATGCTGTTACTACGCTGGTTAAGGGCTTATATGGGATAAAGGAAGAAATCTTCCTCAGTATCCCGTGTG
TCTTGGGACAAAGTGGCATCACAGACCTTGTGAAAGTCAACATGAACACCGAGGAGGAAGCTCTTTTTAAGAAGAGTTGC
GACATACTCTGGAACATCCAGAAAGATCTGCAATTATAA
ATGTCCACTGTCAAGGAGCAGCTAATTCAGAACCTAGCTCCAGATGAAAAACAATCCCGGTGTAAGATCACTGTGGTCGG
AGTTGGAAATGTGGGCATGGCGTGTGCCATTAGTATTTTACTGAAGGGTCTGGCTGATGAACTTGCCCTTGTTGATGCTG
ATGAGAACAAACTGAAGGGAGAGGCACTGGATCTTCTGCATGGCAGCCTTTTCCTCAGCACTCCAAAAATCGTCTTTGGA
AAAGATTACAGTGTATCTGCCAACTCCAAACTGGTTATTATCACTGCTGGTGCAAGAATGGTGAGTGGAGAATCTCGTCT
TGCCCTGCTCCAACGTAATGTCACTATCATGAAAGCCATCGTTCCCGGCGTAATCCAAAACAGTCCGGACTGTAAAATAA
TGATTGTCACAAACCCAGTCGATATTTTGACATACGTGGTTTGGAAGATAAGTGGCCTCCCTGTAAGCAGTGTGATTGGA
AGTGGCTGTAACCTAGACTCCGCTCGTTTCCGTTACCTGATTGGAGAGAAGCTGGGTGTCAACCCTTCGAGCTGCCATGG
CTGGGTTCTTGGAGAACATGGGGACTCCAGTGTGCCCATATGGAGTGGTGTGAACATTGCTGGCGTAACTCTGAAGTCAC
TGAACCCAGCAATAGGATCCGACTCCGATAAGGAACAGTGGAAAACCGTTCACAAGCAGGTGGTGGATGGTGGCTATGAG
GTCCTTAACCTGAAGGGCTATACCTCTTGGGCCATTGCGCTGTCTGTGACTGATATCGCTGCATCAATCTTGAAGAATCT
TAAGAGGGTGCATGCTGTTACTACGCTGGTTAAGGGCTTATATGGGATAAAGGAAGAAATCTTCCTCAGTATCCCGTGTG
TCTTGGGACAAAGTGGCATCACAGACCTTGTGAAAGTCAACATGAACACCGAGGAGGAAGCTCTTTTTAAGAAGAGTTGC
GACATACTCTGGAACATCCAGAAAGATCTGCAATTATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 0 .07 RPM |
| SRP017611_kidney | 1 .05 RPM |
| SRP017611_brain | 0 .00 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Rattus norvegicus | ENSRNOG00000013000 | within_species_paralog | 3 retrogenes | |
| Rattus norvegicus | ENSRNOG00000013009 | within_species_paralog | 17 retrogenes | |
| Tupaia belangeri | ENSTBEG00000011741 | ortholog_one2one | 24 retrogenes |
retro_tbel_1130, retro_tbel_1300, retro_tbel_1344, retro_tbel_1657, retro_tbel_2072, retro_tbel_2125, retro_tbel_2227, retro_tbel_2254, retro_tbel_2367, retro_tbel_2433, retro_tbel_2640, retro_tbel_2775, retro_tbel_2859, retro_tbel_2877, retro_tbel_2960, retro_tbel_3042, retro_tbel_3188, retro_tbel_3468, retro_tbel_3683, retro_tbel_4189, retro_tbel_4323, retro_tbel_4557, retro_tbel_499, retro_tbel_676,
|
| Tarsius syrichta | ENSTSYG00000008062 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_rnor_499 | 65.04 | 79.52 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_rnor_2081 | 59.34 | 99.40 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSRNOG00000013103 retrocopies