RetrogeneDB ID: | retro_tbel_2602 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_113797:61149..61463(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SRSF9 | ||
Ensembl ID: | ENSTBEG00000008499 | ||
Aliases: | None | ||
Description: | serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:10791] |
Percent Identity: | 62.26 % |
Parental protein coverage: | 53.3 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | NQHGLVPFAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFP-RTYGGRGGWPRGGRNGPPTRRSDFRVLV |
NQ..LVPFAF..FEDP..AE.A.YGRNGY..GQC.L..EFP.RT.G..G.WPRG.RNG.PTR.S.FRVLV | |
Retrocopy | NQLCLVPFAFLGFEDPQNAENAMYGRNGYHCGQCHL*GEFP<RTCGVWGWWPRGRRNGLPTRTSEFRVLV |
Parental | SGLPPSGSWQDLKDHMREAGDVCYADVQKDGMGMVE |
..LPPSGSWQDLKDHM.EA....Y...........E | |
Retrocopy | LELPPSGSWQDLKDHMLEAVMQLYRRIELGWLSISE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000012792 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009241 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000001187 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000012598 | 2 retrocopies | |
Homo sapiens | ENSG00000111786 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000016494 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015661 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000003852 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004234 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005031 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000005685 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000009906 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001972 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008499 | 1 retrocopy |
retro_tbel_2602 ,
|
Tupaia belangeri | ENSTBEG00000013448 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000006848 | 4 retrocopies |