Parental gene:

SRSF9, ENSCJAG00000001187

Aliases:None
Description:serine/arginine-rich splicing factor 9 [Source:HGNC Symbol;Acc:10791]
Organism:Marmoset (Callithrix jacchus)
Coordinates:9:111312897..111320426(-)


>ENSCJAG00000001187
GCCTTCGTGCGGTTCGAGGACCCCCGAGATGCAGAGGATGCAATTTATGGAAGGAATGGTTATGATTATGGCCAGTGTCG
GCTTCGTGTGGAGTTCCCCAGGACTTATGGAGGTCGGGGTGGGTGGCCCCGTGGTGGGAGGAATGGGCCTCCTACAAGAA
GATCTGATTTCCGAGTTCTTGTTTCAGGCCTAGGACTTCCTCCATCAGGCAGCTGGCAGGACCTGAAGGATCACATGCGA
GAAGCTGGGGATGTCTGTTATGCCGATGTGCAGAAGGATGGAGTGGGGATGGTTGAGTATCTCAGAAAAGAAGACATGGA
ATATGCCCTGCGTAAACTGGATGATACCAAATTCCGCTCTCATGAGGGTGAAACTTCCTACATCCGAGTTTATCCTGAGA
GAAGCACCAGCTATGGCTACTCACGGTCTCGGTCTGGGTCAAGGGGCCGTGACTCTCCATACCAAAGCAGGGGTTCCCCA
CACTACTTCTCTCCTTTCAGGCCCTACTGA

Library Parental gene expression (RPM)
SRP051959_spleen 12 .65 RPM
SRP051959_skeletal_muscle 5 .35 RPM
SRP051959_lymph_node 10 .96 RPM
SRP051959_lung 10 .10 RPM
SRP051959_liver 9 .96 RPM
SRP051959_kidney 13 .02 RPM
SRP051959_heart 7 .30 RPM
SRP051959_colon 9 .74 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000012792 ortholog_one2one 1 retrogene
retro_btau_837,
Choloepus hoffmanni ENSCHOG00000009241 ortholog_one2one 1 retrogene
retro_chof_1119,
Callithrix jacchus ENSCJAG00000009971 within_species_paralog 3 retrogenes
retro_cjac_3688, retro_cjac_3883, retro_cjac_3899,
Callithrix jacchus ENSCJAG00000016062 other_paralog 5 retrogenes
retro_cjac_1035, retro_cjac_1969, retro_cjac_2006, retro_cjac_620, retro_cjac_746,
Dasypus novemcinctus ENSDNOG00000012598 ortholog_one2one 2 retrogenes
retro_dnov_1555, retro_dnov_2648,
Homo sapiens ENSG00000111786 ortholog_one2one 1 retrogene
retro_hsap_2530,
Macaca mulatta ENSMMUG00000016494 ortholog_one2one 1 retrogene
retro_mmul_2154,
Nomascus leucogenys ENSNLEG00000015661 ortholog_one2one 1 retrogene
retro_nleu_1931,
Otolemur garnettii ENSOGAG00000003852 ortholog_one2one 1 retrogene
retro_ogar_2328,
Ochotona princeps ENSOPRG00000004234 ortholog_one2one 1 retrogene
retro_opri_878,
Pongo abelii ENSPPYG00000005031 ortholog_one2many 1 retrogene
retro_pabe_119,
Sarcophilus harrisii ENSSHAG00000005685 ortholog_one2one 1 retrogene
retro_shar_598,
Sus scrofa ENSSSCG00000009906 ortholog_one2one 1 retrogene
retro_sscr_745,
Tupaia belangeri ENSTBEG00000008499 ortholog_one2one 1 retrogene
retro_tbel_2602,
Tarsius syrichta ENSTSYG00000006848 ortholog_one2one 4 retrogenes
retro_tsyr_1432, retro_tsyr_1648, retro_tsyr_585, retro_tsyr_891,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_442 91.72 99.41
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Download FASTA sequences of all ENSCJAG00000001187 retrocopies