RetrogeneDB ID: | retro_tbel_2672 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_116059:44396..45232(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KPNA2 | ||
Ensembl ID: | ENSTBEG00000006274 | ||
Aliases: | None | ||
Description: | karyopherin alpha 2 (RAG cohort 1, importin alpha 1) [Source:HGNC Symbol;Acc:6395] |
Percent Identity: | 93.21 % |
Parental protein coverage: | 52.84 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | EILPTLVRLLHHDDPEVLADTCWAISYLTDGPNERIEMVVKTGVVPQLVKLLGATELPIVTPALRAIGNI |
.ILPTLV.LLHHDDPEVLADTCWAISYL.DGPNERIEM.VKTGVVPQ.VKLLGATELPIVTPALRAIG.I | |
Retrocopy | QILPTLVCLLHHDDPEVLADTCWAISYLSDGPNERIEMIVKTGVVPQRVKLLGATELPIVTPALRAIGDI |
Parental | VTGTDEQTQVVIDAGALAVFPSLLTNSKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD |
VTGTD.QTQVVIDAGALA.FPSLLTNSK.NIQKEA.WTMSNITAGRQDQI.QVVNHGLV.FL.GVLSKAD | |
Retrocopy | VTGTDGQTQVVIDAGALAIFPSLLTNSKMNIQKEAPWTMSNITAGRQDQIKQVVNHGLVLFLIGVLSKAD |
Parental | FKTQK-EAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILVILDAISNIFQAAEKLGETEK |
.KTQK.EAVWAVTNYTSG.TVEQI.YLVHCGIIEPLM.LLTAKDTKIILVILDAISNIFQAAEKLG.TEK | |
Retrocopy | CKTQK<EAVWAVTNYTSGKTVEQIEYLVHCGIIEPLMSLLTAKDTKIILVILDAISNIFQAAEKLG*TEK |
Parental | LSIMIEECGGLDKIEALQNHENESVYKSSLNLIEKYFSVEEEEDQNVVPETTSDSYTFQVQDGTPGAFNF |
LSIMIEECGGLDKIEALQNHENESVYKSSLNLIEKYFSVEEEEDQNVVPETTSDSYTFQVQDGTPGAFNF | |
Retrocopy | LSIMIEECGGLDKIEALQNHENESVYKSSLNLIEKYFSVEEEEDQNVVPETTSDSYTFQVQDGTPGAFNF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018411 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000011598 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000026318 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000019151 | 6 retrocopies | |
Echinops telfairi | ENSETEG00000004445 | 2 retrocopies | |
Felis catus | ENSFCAG00000001936 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000027946 | 7 retrocopies | |
Macaca mulatta | ENSMMUG00000018256 | 3 retrocopies | |
Monodelphis domestica | ENSMODG00000003897 | 1 retrocopy | |
Mus musculus | ENSMUSG00000018362 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000008569 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000015329 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000011391 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000006274 | 14 retrocopies | |
Tupaia belangeri | ENSTBEG00000009007 | 3 retrocopies |