RetrogeneDB ID: | retro_tbel_3164 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_132516:91579..91967(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E1B | ||
Ensembl ID: | ENSTBEG00000001631 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4E family member 1B [Source:HGNC Symbol;Acc:33179] |
Percent Identity: | 59.09 % |
Parental protein coverage: | 72.88 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | LWFFKNDRSRAWQDNLH-LVTKVDTVEDFWALHQHIQLASKLSPGCDYALFKDGIRPMWEDSRNKRGGRW |
LWF.KND....WQ..L..L.....T.EDFWALH.HI.L.S.L..GCDY.LFKDG..PMWED..NK...RW | |
Retrocopy | LWFLKNDKNKTWQAKL**LIFEFGTPEDFWALHNHI*LSSNLMLGCDYLLFKDGVEPMWEDEKNKWRRRW |
Parental | LVSLAKQRRH-SELDRLWLETLLC-LIGESFAEHSREVCGAVINVRAKGDKLAVWTMEAENQ |
L..L.KQ.R..S..D..WLETLLC.LIGESF...S...CGAV.NVRAK.DK.A..T.E.EN. | |
Retrocopy | LTTLNKQQRQ<SDFDYFWLETLLC<LIGESFDDYSDDGCGAVVNVRAKDDKIAIGTTECENR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003103 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005920 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027919 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005097 | 3 retrocopies | |
Mus musculus | ENSMUSG00000074895 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012532 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008875 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000001631 | 2 retrocopies |
retro_tbel_3164 , retro_tbel_3690,
|
Tupaia belangeri | ENSTBEG00000004455 | 11 retrocopies | |
Drosophila melanogaster | FBgn0035709 | 1 retrocopy |