RetrogeneDB ID: | retro_mmus_510 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:162628359..162629007(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000091743 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Eif4e1b | ||
Ensembl ID: | ENSMUSG00000074895 | ||
Aliases: | Eif4e1b, Eif4eloo, Gm273 | ||
Description: | eukaryotic translation initiation factor 4E family member 1B [Source:MGI Symbol;Acc:MGI:2685119] |
Percent Identity: | 91.82 % |
Parental protein coverage: | 90.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PSEATAEGVQAGEAKDLPGSLKTQRRKAHREHPPEVLSKLHPLQYRWVLWFFKNDRSRAWQDNLQLVTKF |
PSEATAEGVQAGEA.DLPGSLKTQRRKAH.EHP.EVLSKLHPLQYRWVLWFFKNDRSRAWQDNLQLV.KF | |
Retrocopy | PSEATAEGVQAGEARDLPGSLKTQRRKAHKEHPSEVLSKLHPLQYRWVLWFFKNDRSRAWQDNLQLVSKF |
Parental | NTVEDFWAVYSHIKLASKLSSGCDYALFKEGILPMWEDNRNKQGGRWLLSIDKQLRHFELDRLWLETLLC |
NTVEDFW..YSHIKLASKLSS.CDYALFKEGILPMWEDNRNK.G.RWLLSIDKQLRHFELDRLWLETL.C | |
Retrocopy | NTVEDFWVMYSHIKLASKLSSCCDYALFKEGILPMWEDNRNKWGSRWLLSIDKQLRHFELDRLWLETLVC |
Parental | LVGNCFEEYSREVCGAVVNIRTKRDKIALWTSEAEDKAGVMQIGQIYKERLGISTKTIIGYQAHADTAAK |
LVGNCFEEYS....GAVVNI.TKRDKIALWT.EAEDKAGVMQIGQIYKERLGI.TKTI.GYQAHADTAAK | |
Retrocopy | LVGNCFEEYS----GAVVNICTKRDKIALWTNEAEDKAGVMQIGQIYKERLGIPTKTILGYQAHADTAAK |
Parental | SNNLANKFVV |
SNNLANKFVV | |
Retrocopy | SNNLANKFVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .02 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .00 RPM |
SRP007412_heart | 0 .00 RPM | 0 .00 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .00 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .55 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003103 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005920 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027919 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005097 | 3 retrocopies | |
Mus musculus | ENSMUSG00000028156 | 6 retrocopies | |
Mus musculus | ENSMUSG00000074895 | 1 retrocopy |
retro_mmus_510 ,
|
Nomascus leucogenys | ENSNLEG00000012532 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008875 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000001631 | 2 retrocopies | |
Drosophila melanogaster | FBgn0035709 | 1 retrocopy |