RetrogeneDB ID: | retro_tbel_3690 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_148584:32042..32468(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4E1B | ||
Ensembl ID: | ENSTBEG00000001631 | ||
Aliases: | None | ||
Description: | eukaryotic translation initiation factor 4E family member 1B [Source:HGNC Symbol;Acc:33179] |
Percent Identity: | 53.52 % |
Parental protein coverage: | 80.23 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 0 |
Parental | PPPTRWALWFFKNDRSRAWQDNLHLVTKVDTVEDFWALHQHIQLASKLSPGCDYALFKDGIRPMWEDSRN |
P...RWALW.FKN..S..WQ.N..L..K.DTVEDFWAL...I.....L.P.CDY..FK.GI..MWED..N | |
Retrocopy | PLQNRWALWAFKNNESKTWQTNIQLISKLDTVEDFWALYYRI*WSGNLMPVCDYSPFKNGIELMWEDKKN |
Parental | KRGGRWLVSLAKQRRHSELDRLWLETLLCLIGESFAEHSREVCGAVINVRAKGDKLAVWTMEAENQAGVL |
..G..WL....KQ.R.S.....WLETLL.L.GESF...S..VC.AV.NVR.KG.K.A.WT...EN...V. | |
Retrocopy | E*GE*WLMT*SKQQRWSDFYCFWLETLLYLMGESFDDYSDDVCEAVVNVRTKGYKTAMWTTK*ENRKVVT |
Parental | YI |
YI | |
Retrocopy | YI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000003103 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005920 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000027919 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000005097 | 3 retrocopies | |
Mus musculus | ENSMUSG00000074895 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000012532 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000008875 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000001631 | 2 retrocopies |
retro_tbel_3164, retro_tbel_3690 ,
|
Tupaia belangeri | ENSTBEG00000004455 | 11 retrocopies | |
Drosophila melanogaster | FBgn0035709 | 1 retrocopy |