RetrogeneDB ID: | retro_tbel_4003 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_5279:38780..39156(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUDT21 | ||
Ensembl ID: | ENSTBEG00000007664 | ||
Aliases: | None | ||
Description: | nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:HGNC Symbol;Acc:13870] |
Percent Identity: | 72.31 % |
Parental protein coverage: | 55.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MSVVPPNR-SQTGWPRGVNQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMRE |
MS.VPPN..SQ...P.GVNQF..K..QQTKPLTLE.TINL..LTNYTF.TKEPL..KD.SVAARFQ.MRE | |
Retrocopy | MSIVPPNT<SQASCP-GVNQFSTKNTQQTKPLTLECTINLCSLTNYTFSTKEPLC-KDRSVAARFQSMRE |
Parental | EFDKI-GMRRTVEGVLIV-HEHRLPHVLLLQLGTTFFKLPGGELNPGEDEVEGLKRLMTE |
EF....G.RRTVEGVLIV.....LPHV.LLQLGTT.F.LPG.ELNPGE.E.EGLKRLMT. | |
Retrocopy | EFVTL<GVRRTVEGVLIVLSTGSLPHVFLLQLGTTVFRLPGSELNPGEEEAEGLKRLMTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016628 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012724 | 3 retrocopies | |
Equus caballus | ENSECAG00000001043 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003402 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000028465 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004968 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003451 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017224 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000009651 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029848 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000007664 | 1 retrocopy |
retro_tbel_4003 ,
|
Vicugna pacos | ENSVPAG00000003701 | 2 retrocopies |