RetrogeneDB ID: | retro_vpac_340 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_10346:11028..11689(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NUDT21 | ||
Ensembl ID: | ENSVPAG00000003701 | ||
Aliases: | None | ||
Description: | nudix (nucleoside diphosphate linked moiety X)-type motif 21 [Source:HGNC Symbol;Acc:13870] |
Percent Identity: | 82.96 % |
Parental protein coverage: | 97.8 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | SVVPPNRSQTGWPRGVNQFGNKYIQQTKPLTLERTINLYPLTNYTFGTKEPLYEKDSSVAARFQRMREEF |
SVVPP..SQT..P.GVNQFGNKY.QQTKPLTLER..NL.PLT..TFG.KEPLYEK.SSVAAR.QR.RE.F | |
Retrocopy | SVVPPSSSQTAGP-GVNQFGNKYVQQTKPLTLERAMNL*PLTD*TFGIKEPLYEKGSSVAARCQRLREGF |
Parental | DKIGMRRTVEGVLIVHEHRLPHVL-LLQLGTTFFKLPGGELNPGEDEVEGLKRLMTELLGRQDGVLQDWV |
DKIGMR..VEGVLIVHEHRLP.VL.L.QL.T.FFKLPGGELNP.EDEVEGLK.LMTE.L.RQDGVLQDWV | |
Retrocopy | DKIGMRMIVEGVLIVHEHRLPDVL>LPQLPTAFFKLPGGELNPREDEVEGLKCLMTEILDRQDGVLQDWV |
Parental | IDDCIGNWWRPNFEPPQYPYIPAHITKPKEHKKLFLVQLQEKALFAVPKNYKLVAAPLFELYDNAPGYGP |
.D.CIGNWWR.NFEPPQ.PYIPAHI.KPKEHKKL.LVQLQEKALFA.PKNYKLVAAPLFELYDNAPGYGP | |
Retrocopy | TDYCIGNWWRTNFEPPQCPYIPAHIAKPKEHKKLCLVQLQEKALFAIPKNYKLVAAPLFELYDNAPGYGP |
Parental | IISSLPQLLSRFN |
I.SSLPQLL...N | |
Retrocopy | I-SSLPQLLCIYN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016628 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012724 | 3 retrocopies | |
Equus caballus | ENSECAG00000001043 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000003402 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000028465 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000004968 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003451 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017224 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000009651 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000029848 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000007664 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000003701 | 2 retrocopies |
retro_vpac_340 , retro_vpac_605,
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