Parental gene:

ENSSSCG00000029848

Aliases:None
Description:None
Organism:Pig (Sus scrofa)
Coordinates:GL893413.1:33603..44443(+)


>ENSSSCG00000029848
ATGTCTGTGGTGCCGCCCAATCGCTCGCAGACCGGCTGGCCCCGGGGGGTCAACCAGTATGGCAACAAGTACATCCAGCA
GACCAAGCCCCTCTCCCTGGAGCGCACCATCAACCTGTACCCTCTTACCAATTATACTTTTGGTACAAAAGAGCCCCTCT
ATGAGAAGGACAGCTCTGTTGCCGCCAGATTTCAGCGCATGAGGGAGGAATTTGATAAAATTGGCATGAGGAGGACTGTA
GAAGGAGTTTTGATTGTCCATGAGCACCGGCTACCCCATGTGTTACTGCTTCAGCTGGGAACAACTTTCTTCAAATTACC
AGGTGGTGAGCTTAACCCAGGAGAAGATGAAGTTGAAGGACTAAAACGCTTAATGACAGAGATACTGGGTCGTCAAGATG
GAGTCCTGCAAGACTGGGTCATTGATGATTGCATTGGTAACTGGTGGAGACCAAATTTTGAACCTCCTCAGGTCAGTGTT
CAGTTATTTTTGCTGGGCATTTGGGGAAGTAGGAAGCTGATTTAA

Library Parental gene expression (RPM)
SRP014902_placenta 15 .40 RPM
SRP014902_testis 17 .54 RPM
SRP018288_heart 12 .49 RPM
SRP018288_kidney 21 .28 RPM
SRP018288_liver 15 .51 RPM
SRP018288_lung 26 .78 RPM
SRP018856_adipose 18 .46 RPM
SRP035408_brain 8 .07 RPM
SRP035408_liver 9 .01 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000016628 possible_ortholog 1 retrogene
retro_amel_540,
Bos taurus ENSBTAG00000010207 possible_ortholog 2 retrogenes
retro_btau_1655, retro_btau_937,
Callithrix jacchus ENSCJAG00000012724 possible_ortholog 3 retrogenes
retro_cjac_1121, retro_cjac_2211, retro_cjac_4100,
Cavia porcellus ENSCPOG00000003705 possible_ortholog 1 retrogene
retro_cpor_1054,
Equus caballus ENSECAG00000001043 possible_ortholog 1 retrogene
retro_ecab_292,
Erinaceus europaeus ENSEEUG00000003402 possible_ortholog 1 retrogene
retro_eeur_35,
Echinops telfairi ENSETEG00000013634 possible_ortholog 1 retrogene
retro_etel_622,
Felis catus ENSFCAG00000008669 possible_ortholog 1 retrogene
retro_fcat_1843,
Loxodonta africana ENSLAFG00000028465 possible_ortholog 1 retrogene
retro_lafr_610,
Myotis lucifugus ENSMLUG00000004968 possible_ortholog 2 retrogenes
retro_mluc_1576, retro_mluc_999,
Macaca mulatta ENSMMUG00000019906 possible_ortholog 1 retrogene
retro_mmul_1360,
Mustela putorius furo ENSMPUG00000003451 possible_ortholog 1 retrogene
retro_mputfur_158,
Mus musculus ENSMUSG00000031754 possible_ortholog 3 retrogenes
retro_mmus_1949, retro_mmus_1950, retro_mmus_2142,
Nomascus leucogenys ENSNLEG00000001963 possible_ortholog 2 retrogenes
retro_nleu_1477, retro_nleu_2493,
Oryctolagus cuniculus ENSOCUG00000017224 possible_ortholog 2 retrogenes
retro_ocun_154, retro_ocun_87,
Otolemur garnettii ENSOGAG00000014888 possible_ortholog 2 retrogenes
retro_ogar_1450, retro_ogar_630,
Ochotona princeps ENSOPRG00000006689 possible_ortholog 1 retrogene
retro_opri_637,
Pteropus vampyrus ENSPVAG00000014583 possible_ortholog 2 retrogenes
retro_pvam_533, retro_pvam_711,
Sorex araneus ENSSARG00000006493 possible_ortholog 2 retrogenes
retro_sara_161, retro_sara_580,
Sarcophilus harrisii ENSSHAG00000009651 possible_ortholog 1 retrogene
retro_shar_469,
Tupaia belangeri ENSTBEG00000007664 possible_ortholog 1 retrogene
retro_tbel_4003,
Tarsius syrichta ENSTSYG00000014602 possible_ortholog 4 retrogenes
retro_tsyr_1685, retro_tsyr_1888, retro_tsyr_790, retro_tsyr_988,
Tursiops truncatus ENSTTRG00000013545 possible_ortholog 1 retrogene
retro_ttru_1087,
Vicugna pacos ENSVPAG00000003701 possible_ortholog 2 retrogenes
retro_vpac_340, retro_vpac_605,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_117 84.08 89.66
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2. retro_sscr_185 88.68 90.23
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Download FASTA sequences of all ENSSSCG00000029848 retrocopies