RetrogeneDB ID: | retro_tbel_4008 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_53546:256..812(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AIMP1 | ||
Ensembl ID: | ENSTBEG00000004412 | ||
Aliases: | None | ||
Description: | aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:HGNC Symbol;Acc:10648] |
Percent Identity: | 70.74 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | VEKKGEKKE-KKQPSVAASADSKPVDVSRLDLRIGCIVTARKHPDADSLYVEEVDVGEP-APRTVVSGLV |
VEKKGE....KK...................LR.....T.RK.PDADS.Y.EEVD......P.TVVSG.. | |
Retrocopy | VEKKGEMQG<KKNQTICSTKCLSQ*QFNGVELRTDRMATVRKQPDADSGYMEEVDARDT<SPKTVVSGEG |
Parental | NHVPLEQMQNRMVVLLCNLKPAKMRGVVSQAMVMCASSPEKVEILAPPEGSVPGDKITFDAFPGEPDKEL |
NHVPLE.MQNRMVVLLCNLK...MRGV.S.A.VMC.SSPE.VEI.A.P.GSVPGDKITFDAFPGEP.KEL | |
Retrocopy | NHVPLERMQNRMVVLLCNLKQPEMRGVLSPARVMCGSSPEEVEIWALPDGSVPGDKITFDAFPGEPNKEL |
Parental | NPKKKIWEQIQPDLHTNEDCVATYRGVPFQVKGKGVCRAQTMANSGIK |
NPKKKIWEQIQPDLHTNEDCVATYRGVPFQVKGKG.CRAQTMANSGIK | |
Retrocopy | NPKKKIWEQIQPDLHTNEDCVATYRGVPFQVKGKGMCRAQTMANSGIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000619 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000015885 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005018 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008952 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028029 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000014981 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011384 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008178 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000004412 | 1 retrocopy |
retro_tbel_4008 ,
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