RetrogeneDB ID: | retro_itri_1173 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393393.1:2783500..2784013(+) | ||
Located in intron of: | ENSSTOG00000008672 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | AIMP1 | ||
Ensembl ID: | ENSSTOG00000008178 | ||
Aliases: | None | ||
Description: | aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:HGNC Symbol;Acc:10648] |
Percent Identity: | 64.97 % |
Parental protein coverage: | 53.21 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | QSLAGSVDSKPIDVSRLDLRIGCIITAKKH-PDADS-LYVEEVDVGETVPRTVVSGLVNHVPLEQMQNRM |
QSL..S..SKPIDVS.LD..IGCIITAKKH.PD.D..L.VE.VDVGE..PRTVVS.LVNHVP.E.MQN.M | |
Retrocopy | QSLEESAHSKPIDVSYLDPQIGCIITAKKH<PDTDF<LHVEKVDVGEIAPRTVVSALVNHVPFEKMQNQM |
Parental | VILLCNLKPAKMRGVLSQAMVMCASSPEKVEILDPPNGSVPGDRITFDTFPGEPDKELNPKKKIWEQIQP |
..L...L.PA.MRGV.SQ.M.MC..SPE.V..L.P...S.PGD..TFDTFPGE.DK.LNPK..I..QI.P | |
Retrocopy | ISLY-KLRPAEMRGVPSQIMGMCDVSPE-VDSLAPLSRSLPGD*MTFDTFPGETDKDLNPK*MIGDQIKP |
Parental | DLYTNDEGVAT-YKGAPFEVKGKGVCRAQTMTKSGIK |
DL.TN...VAT..KG.P.E.KGKG..RAQ.MT.S.IK | |
Retrocopy | DLHTN**HVAT<KKGVPSEEKGKGANRAQFMTNSEIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000619 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000015885 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000005018 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000008952 | 1 retrocopy | |
Mus musculus | ENSMUSG00000028029 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000014981 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011384 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000008178 | 1 retrocopy |
retro_itri_1173 ,
|
Tupaia belangeri | ENSTBEG00000004412 | 1 retrocopy |