Parental gene:

AIMP1, ENSCJAG00000015885

Aliases:None
Description:aminoacyl tRNA synthetase complex-interacting multifunctional protein 1 [Source:HGNC Symbol;Acc:10648]
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:87273359..87311851(-)


>ENSCJAG00000015885
ATGCTTCCTGCTGTGGCTGTCTGGGAACCTGGCCGCCGCTTCATGATTTTCTGCTGCCTCTTGGCAAAAATGGCAAATAA
TGATGCTGTTCTGAAGAGACTAGAGCAGAAGGGTGCAGAGGCAGATCAAATCATTGAATATCTTAAGCAGCAGGTTGCTC
TACTTAAGGAGAAAGCAATTTTGCAGGCAACTTTGAGGGAAGAGAAGAAACTTCGAGTTGAAAATGCTAAACTAAAGAAA
GAAATTGAAGAACTGAAACAAGAGCTCATTCAAGCAGAAATTCAAAATGGAGTGAAGCAAATACCATTTCCATCTGGTGC
TCCCTTGGAAGCTAATTCTGTGGTTTCTGAAAATGTGATACAGTCTACACCAGTAACAACCGTATCTTTTGGTACCAAAC
AACAGATAAAAGGAGGAACAGGAGAAGAAAAGAAAGCAAAAGAGAAAACTGAAAATAAAGTAGAGAAGAAGGAGAAAAAA
CAGCAATCAGTAGCTGGAAGTACCAACTCTAGTCCAATAGATGTTTCCCGTCTGGATCTTCGAATTGGTTGCATCATAAC
TGCCAAAAAACACCCTGATGCAGATTCTTTGTATGTAGAAGAAGTAGATGTTGGAGAAATAACCCCAAGAACAGTTGTCA
GTGGCCTGGTGAATCATGTTCCTCTTGAACAGATGCAAAATCGGATGGTGGTTTTACTTTGTAATCTGAAACCTGCAAAG
ATGAGGGGAGTATTGTCTCAAGCAATGGTCATGTGTGCTAGTTCACCAGAGAAAGTTGAAATCTTGGCACCTCCAAATGG
GTCTGTTCCTGGAGACAGAATTACTTTTGCAGCTTTCCCAGGAGTGCCCGACAAGGAGCTGAATCCTAAGAAGAAGATTT
GGGAGCAGATCCAGCCTGATCTTCACACTAATGATGAGTGTGTGGCTACATACAAAGGAGTTCCCTTTGAGGTGAAAGGG
AAGGGAGTGTGTAGGGCTCAAACCATGAGCAACAGTGGTATCAAATAA

Library Parental gene expression (RPM)
SRP051959_spleen 13 .74 RPM
SRP051959_skeletal_muscle 39 .31 RPM
SRP051959_lymph_node 12 .58 RPM
SRP051959_lung 11 .79 RPM
SRP051959_liver 23 .11 RPM
SRP051959_kidney 14 .22 RPM
SRP051959_heart 18 .68 RPM
SRP051959_colon 9 .45 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000000619 ortholog_one2one 2 retrogenes
retro_chof_1176, retro_chof_2050,
Dipodomys ordii ENSDORG00000005018 ortholog_one2one 1 retrogene
retro_dord_540,
Mustela putorius furo ENSMPUG00000008952 ortholog_one2one 1 retrogene
retro_mputfur_1606,
Mus musculus ENSMUSG00000028029 ortholog_one2one 2 retrogenes
retro_mmus_2271, retro_mmus_3334,
Pongo abelii ENSPPYG00000014981 ortholog_one2one 1 retrogene
retro_pabe_1780,
Rattus norvegicus ENSRNOG00000011384 ortholog_one2many 1 retrogene
retro_rnor_1704,
Ictidomys tridecemlineatus ENSSTOG00000008178 ortholog_one2one 1 retrogene
retro_itri_1173,
Tupaia belangeri ENSTBEG00000004412 ortholog_one2one 1 retrogene
retro_tbel_4008,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2504 68.72 57.91
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Download FASTA sequences of all ENSCJAG00000015885 retrocopies