RetrogeneDB ID: | retro_tcac_8 | ||
Retrocopylocation | Organism: | Cacao (Theobroma cacao) | |
Coordinates: | 5:4533332..4534007(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | TCM_022426 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | TCM_028816 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.5 % |
Parental protein coverage: | 97.53 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AVGDTIPDGTLSYADEDDQILNVSVHSLAACKQVILVGVPGAFTPTCSLKHVPGFIEKAEELKSKGISEI |
.VGD..PD.TLSY.D.D......SV.SL.A.K.V.L..VPGAFTPTCS.KH.PGF.EK..ELK.KG...I | |
Retrocopy | SVGDKLPDATLSYFDADGELQTTSVSSLTAGKKVVLFAVPGAFTPTCSQKHLPGFVEKSGELKAKGVDTI |
Parental | FLISVNDPYVMKAWAKSYPENKHVKFFSDSSAAYIKTLGLDLDVSDR--GFGVRSQRFALLIDDLKVKVV |
...SVND..VM.AW......N..V...SD......K..G..LD.SD...G.GVRS.R.ALL.....VKV. | |
Retrocopy | ACVSVNDSFVMRAWKENLGINDEVLLLSDGNGEFTKKIGCELDLSDKPVGLGVRSRRYALLAENGVVKVL |
Parental | NVESGGQFKVSSAEDMLKSL |
N.E.GG.F..S.AED.LK.L | |
Retrocopy | NLEEGGAFTFSGAEDILKVL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Arabidopsis thaliana | AT1G65980 | 1 retrocopy | |
Arabidopsis lyrata | fgenesh2_kg.2__836__AT1G65980.1 | 1 retrocopy | |
Glycine max | GLYMA07G09240 | 1 retrocopy | |
Hordeum vulgare | MLOC_12954 | 1 retrocopy | |
Populus trichocarpa | POPTR_0018s09030 | 1 retrocopy | |
Prunus persica | PRUPE_ppa012586mg | 1 retrocopy | |
Sorghum bicolor | Sb03g030950 | 1 retrocopy | |
Selaginella moellendorffii | SELMODRAFT_159225 | 1 retrocopy | |
Solanum lycopersicum | Solyc07g020860.2 | 1 retrocopy | |
Theobroma cacao | TCM_028816 | 1 retrocopy |
retro_tcac_8 ,
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