Common name: Cacao
Latin name: Theobroma cacao
Genome assembly: GCA_000403535.1
All retrocopies: 38
Parental genes: 38

Summary: Number of retrocopies :
Conserved ORF: 31 ORF 7 ORF

# RetrogeneDB ID Identity Coverage ORF conservation
1. retro_tcac_1 88.26 % 73.56 % ORF
2. retro_tcac_2 56.92 % 84.47 % ORF
3. retro_tcac_3 54.51 % 71.91 % ORF
4. retro_tcac_4 75.38 % 69.15 % ORF
5. retro_tcac_5 55.06 % 97.44 % ORF
6. retro_tcac_6 66.44 % 96.41 % ORF
7. retro_tcac_7 90.52 % 100.00 % ORF
8. retro_tcac_8 52.50 % 97.53 % ORF
9. retro_tcac_9 53.95 % 70.81 % ORF
10. retro_tcac_10 50.31 % 63.39 % ORF
11. retro_tcac_11 91.04 % 100.00 % ORF
12. retro_tcac_12 88.89 % 56.17 % ORF
13. retro_tcac_13 86.71 % 98.85 % ORF
14. retro_tcac_14 96.26 % 100.00 % ORF
15. retro_tcac_15 67.28 % 56.94 % ORF
16. retro_tcac_16 72.44 % 88.68 % ORF
17. retro_tcac_17 80.77 % 53.09 % ORF
18. retro_tcac_18 52.92 % 98.76 % ORF
19. retro_tcac_19 74.71 % 56.68 % ORF
20. retro_tcac_20 56.31 % 54.53 % ORF
21. retro_tcac_21 58.08 % 52.52 % ORF
22. retro_tcac_22 88.09 % 100.00 % ORF
23. retro_tcac_23 66.56 % 81.67 % ORF
24. retro_tcac_24 50.55 % 64.08 % ORF
25. retro_tcac_25 66.81 % 84.87 % ORF
26. retro_tcac_26 95.50 % 58.12 % ORF
27. retro_tcac_27 96.60 % 99.32 % ORF
28. retro_tcac_28 76.11 % 100.00 % ORF
29. retro_tcac_29 51.56 % 68.35 % ORF
30. retro_tcac_30 59.50 % 100.00 % ORF
31. retro_tcac_31 66.27 % 57.29 % ORF
32. retro_tcac_40 51.22 % 66.39 % ORF
33. retro_tcac_43 51.19 % 57.93 % ORF
34. retro_tcac_45 66.67 % 64.75 % ORF
35. retro_tcac_49 62.04 % 63.16 % ORF
36. retro_tcac_50 69.08 % 62.69 % ORF
37. retro_tcac_55 72.48 % 68.69 % ORF
38. retro_tcac_58 75.79 % 62.25 % ORF
# Ensembl ID Symbol Description
1. TCM_007148 Monovalent cation:proton antiporter, putative
2. TCM_015438 Plastid transcriptionally active7 isoform 2
3. TCM_000745 Phosphatase 2C family protein
4. TCM_023563
5. TCM_025950 Copper/zinc superoxide dismutase 1
6. TCM_036681 Surfeit locus protein 5 subunit 22 of Mediator complex
7. TCM_015479 Ubiquitin supergroup,Ribosomal protein L40e
8. TCM_025075 IBR domain-containing protein isoform 1
9. TCM_032188 Nucleolar essential protein-related isoform 2
10. TCM_019441 Ribosomal protein S7e family protein isoform 1
11. TCM_041518 Zinc finger C-x8-C-x5-C-x3-H type family protein isoform 1
12. TCM_045111 Eukaryotic aspartyl protease family protein
13. TCM_001201 NAD(P)-binding Rossmann-fold superfamily protein
14. TCM_015359 Regulatory components of ABA receptor 3 isoform 1
15. TCM_026723 Mitochondrially targeted single-stranded DNA binding protein isoform 1
16. TCM_003770
17. TCM_042615 Nucleotide-sugar transporter family protein
18. TCM_020494 Ribonucleoside-diphosphate reductase small chain A isoform 2
19. TCM_025338 Dynamin related protein 4C
20. TCM_015401 HSP20-like chaperones superfamily protein isoform 2
21. TCM_004565 Cullin 1
22. TCM_002781
23. TCM_016996 Esterase, putative
24. TCM_011909 Arogenate dehydratase/prephenate dehydratase 1 isoform 3
25. TCM_006606 Plasma membrane intrinsic protein 2,8 isoform 1
26. TCM_026940 GTP binding
27. TCM_026453 TATA binding protein 2
28. TCM_030978 Glucose 6-phosphate/phosphate translocator 1 isoform 1
29. TCM_026126 Nucleic acid-binding, OB-fold-like protein isoform 4
30. TCM_036702 Sucrose transport protein SUC2 isoform 1
31. TCM_046769 Leucine-rich repeat protein kinase family protein isoform 1
32. TCM_027247 Ubiquitin system component Cue protein, putative
33. TCM_028816 Thioredoxin-dependent peroxidase 1 isoform 2
34. TCM_025327 Eukaryotic release factor 1 (eRF1) family protein isoform 1
35. TCM_026035 Small basic intrinsic protein 1
36. TCM_001730 Multiprotein bridging factor 1B
37. TCM_046859 Translation initiation factor SUI1 family protein
38. TCM_036352 Ubiquitin carrier protein
Retrogenes FASTA BED
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Parental genes FASTA BED
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