RetrogeneDB ID: | retro_tsyr_194 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_5030:6199..6560(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTSYG00000012508 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 76.19 % |
Parental protein coverage: | 98.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LVIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQ |
LVIPEKF..ILRVL.TNI.G.R.IAFAITAIKG.G.RYAHVVLR.ADIDL.KRA.ELTEDEV.RVITIMQ | |
Retrocopy | LVIPEKFPQILRVLKTNINGWR-IAFAITAIKGLGQRYAHVVLRNADIDLIKRAEELTEDEVKRVITIMQ |
Parental | NPRQYKIPDWFLNRQKDVKDGKYSQ-VLANGLDNKLREDLERLKKIRAHRGLRHFW |
NP.QYKIPDWFLN..KDVKD.K.SQ.VL.N.L....RE.LE.LK.IR.HRGL..FW | |
Retrocopy | NPHQYKIPDWFLNGRKDVKDRKDSQ>VLDNKL----REALEQLKTIRVHRGLCRFW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010356 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012508 | 8 retrocopies |
retro_tsyr_1121, retro_tsyr_1307, retro_tsyr_1627, retro_tsyr_194 , retro_tsyr_1949, retro_tsyr_2042, retro_tsyr_575, retro_tsyr_639,
|