RetrogeneDB ID: | retro_tsyr_575 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_14223:26231..26610(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTSYG00000012508 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 82.03 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | MSLVIPEKFQHILRVLNTN-IDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVIT |
MSLVIPEKFQHILR.LNT..I.G..KIAFAITA.K.VG.RYAHVVLRKADID.TKRAG.LTEDE.E.VIT | |
Retrocopy | MSLVIPEKFQHILRALNTH>ISGQ*KIAFAITAMKSVG*RYAHVVLRKADIDFTKRAGDLTEDEAESVIT |
Parental | IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDLERLKKIRAHRGLRHFW |
IM.N.RQYKIPDWFLNR.KDVKDGKYSQVLANGLD..L.EDLE.LKKI.AHRGL.H.W | |
Retrocopy | IM*NSRQYKIPDWFLNRKKDVKDGKYSQVLANGLD-RLCEDLE*LKKIWAHRGLCHSW |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010356 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012508 | 8 retrocopies |
retro_tsyr_1121, retro_tsyr_1307, retro_tsyr_1627, retro_tsyr_194, retro_tsyr_1949, retro_tsyr_2042, retro_tsyr_575 , retro_tsyr_639,
|