RetrogeneDB ID: | retro_tsyr_639 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_158127:1393..1725(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS18 | ||
Ensembl ID: | ENSTSYG00000012508 | ||
Aliases: | None | ||
Description: | ribosomal protein S18 [Source:HGNC Symbol;Acc:10401] |
Percent Identity: | 82.14 % |
Parental protein coverage: | 87.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MSLVIPEKFQHILRVLNTNIDGRRK-IAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVIT |
M.L.IPE.FQ.ILRVLNTNI..RRK..AFAITAIK.VGRRY.HVVLRKAD..LTKRAGELTEDEVE.VI. | |
Retrocopy | MALGIPETFQYILRVLNTNIYERRK<TAFAITAIKEVGRRYTHVVLRKADTGLTKRAGELTEDEVEHVIA |
Parental | IMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGLDNKLREDL |
.MQNPRQ.KIPDWFL.RQK.VK.GK.SQVLANGLDNKLREDL | |
Retrocopy | MMQNPRQSKIPDWFLDRQKAVKEGKCSQVLANGLDNKLREDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010356 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000032173 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012508 | 8 retrocopies |
retro_tsyr_1121, retro_tsyr_1307, retro_tsyr_1627, retro_tsyr_194, retro_tsyr_1949, retro_tsyr_2042, retro_tsyr_575, retro_tsyr_639 ,
|