RetrogeneDB ID: | retro_tsyr_320 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_807:92205..92608(+) | ||
Located in intron of: | ENSTSYG00000011426 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RANBP1 | ||
Ensembl ID: | ENSTSYG00000013573 | ||
Aliases: | None | ||
Description: | RAN binding protein 1 [Source:HGNC Symbol;Acc:9847] |
Percent Identity: | 76.09 % |
Parental protein coverage: | 69.23 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EWKERGTGDVKLLKHKEKG-TIRLLMRRDKTLKICA-NHYITPMMELKPNAGSDRAWVWNTHADFADECP |
E..E.GT.DVKLLKHKEKG.TI.LL.RRD.TLKI.A..HY.TPMMELKPN.GSD.AW.WN.HADFADEC. | |
Retrocopy | EFPEGGTADVKLLKHKEKG<TICLLLRRDETLKIHA>HHYTTPMMELKPNTGSDSAWGWNAHADFADECS |
Parental | KPELLAIRFLNAENAQK-FKTKFEECRKEIEEREKKAGSGKDDGAEVAEKLEALSVKEETKEEAEEKQ |
KPELLAI.FLNAENAQK..KTK.EEC..EIEE..KK.GSGKD.GAEVAE..EALS....TKEEAEEKQ | |
Retrocopy | KPELLAIGFLNAENAQK>SKTKPEECGREIEEQGKK-GSGKDNGAEVAEGWEALSGNQDTKEEAEEKQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000010749 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000002962 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000784 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016620 | 8 retrocopies | |
Monodelphis domestica | ENSMODG00000010312 | 5 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000006873 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000026840 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000013573 | 1 retrocopy |
retro_tsyr_320 ,
|
Tursiops truncatus | ENSTTRG00000008142 | 2 retrocopies |