RetrogeneDB ID: | retro_itri_1579 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393553.1:1050859..1051313(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000026840 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.29 % |
Parental protein coverage: | 75.74 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGTIRLLMRRDKTLKICANHYITPTM-ELKPNAGSDRA |
.R...FRF.S.NDLPEWKE.GTGDVKLLKHKEK.T.RLLMRR.KTLKIC.NHYITP.M.ELKPNAG.D.A | |
Retrocopy | LRC*QFRFTS*NDLPEWKEGGTGDVKLLKHKEKRTTRLLMRRAKTLKICINHYITPMM<ELKPNAGNDHA |
Parental | WVWNTHADF-ADEYPKPELLAIRFLNAENAQKFKTKFEECRKAIEEREKKGLGKNDNAEKVTEKLEALSV |
WVW.THAD..ADEYPKPELLAI.FLN.ENA.K.KTKF.ECRKA.EER.KKGLGKNDN.EKVT..LEALSV | |
Retrocopy | WVWDTHADL<ADEYPKPELLAIHFLNTENA*KVKTKFKECRKAFEERKKKGLGKNDNVEKVTQELEALSV |
Parental | KEENKEPGEETEEKS |
K.ENKEPGEETEEKS | |
Retrocopy | K-ENKEPGEETEEKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |