RetrogeneDB ID: retro_ttru_1155

Retrocopy location

• Organism: Dolphin (Tursiops truncatus)
• Coordinates: scaffold_105808:87236..87599(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: REEP5
• Ensembl ID: ENSTTRG00000001691
• Aliases: None
• Description: receptor accessory protein 5 [Source:HGNC Symbol;Acc:30077]

Sequence

>retro_ttru_1155
TATGTCTCAATTAAAGCCATAGAGAGCCCCAACATAGAAGATGATACCCAGTGGCTGACCTACTGGGCAGTGTTTGGTGT
GTTCAGCATTGCCGAATTCTTCTCTGACCTCTTCCTGTTATGGTTCCCCTTCTACTACTTGTTGAAGTGCAGCTTCCTGT
TGTGGTGCATGGCTCCCAGCCCTGCCAATAGAGTGGACTTGCTCTATAAGCGCATCATCTTTCTTTTCTTCCTGAAGCAC
AAGTCCCAGGTAGACAAGGCAGTGAATGACTTGAAGGACAAAGCCAAAGAGACGGCAGATGCCATCTCTAAAGAAGCCAA
GAAAGCTGCCGTGAATTTACTGCATGAGAAAAAGAAAAGCACC

Alignment

ORF - retro_ttru_1155 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.12 %
• Parental protein coverage: 64.71 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  YVSIKAIESPNKEDDTQWLTYWVVYGVFSIAEFFSDLFLSWFPFYYMLKCGFLLWCMAPSPANGADLLYT
          YVSIKAIESPN.EDDTQWLTYW.V.GVFSIAEFFSDLFL.WFPFYY.LKC.FLLWCMAPSPAN..DLLY.
Retrocopy YVSIKAIESPNIEDDTQWLTYWAVFGVFSIAEFFSDLFLLWFPFYYLLKCSFLLWCMAPSPANRVDLLYK

Parental  RIIRPLFLKHESQVDNMVNGLKDKAKETADAISKEAKKAAVNLLGEEKKST
          RII...FLKH.SQVD..VN.LKDKAKETADAISKEAKKAAVNLL.E.KKST
Retrocopy RIIFLFFLKHKSQVDKAVNDLKDKAKETADAISKEAKKAAVNLLHEKKKST

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Tursiops truncatus was not studied using RNA-Seq expression data.

ChIP-Seq

Tursiops truncatus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_ttru_1155 retrocopy.

TSS

Tursiops truncatus was not studied using FANTOM5 data.

Lab

retro_ttru_1155 was not experimentally validated.

Homology

Retrocopy orthology:

Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010270	1 retrocopy	retro_etel_2208,
Macropus eugenii	ENSMEUG00000006088	4 retrocopies	retro_meug_1110, retro_meug_1625, retro_meug_293, retro_meug_747,
Tursiops truncatus	ENSTTRG00000001691	1 retrocopy	retro_ttru_1155 ,
Drosophila melanogaster	FBgn0033906	1 retrocopy	retro_dmel_12,