RetrogeneDB ID: retro_meug_1625

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold49370:916..1281(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: REEP5
• Ensembl ID: ENSMEUG00000006088
• Aliases: None
• Description: receptor accessory protein 5 [Source:HGNC Symbol;Acc:30077]

Sequence

>retro_meug_1625
GGTTATGGGGCCTCCCTGCTCTGCCATCTCATCGGATTCATCTGCTCAGCATATGCCTCCATCAAGGCCACTGAAAGCCC
CAGCAAAGATGACAATGCCATCTGGCTAACCTACTGGCTGGTATACAGCATATTTGGCCTGGTTGAGTCTTTTTTGACAT
CTTCCTTTTCTGGTTCTTCTTCTGCTATGCAGAGAAGTTTGCCTTCTTGCTATGGTTCATGCTTCCAATGGCCTGCAATG
GCTCCCAGATTCTATAATGTCGCCTAATCTGCCCCATCTTCCTGAGGCACCAAACTTCCATGGACAACCTGGTGACTGAC
CTGAGTGGATGGGCCCTGAACACAGCAGCCAGTTTGACCCAGGAA

Alignment

ORF - retro_meug_1625 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 53.66 %
• Parental protein coverage: 70.52 %
• Number of stop codons detected: 1
• Number of frameshifts detected: 1

Retrocopy - Parental Gene Alignment:

Parental  GYGASLLCNLIGFGYPAYVSIKAIESPNKEDDTQWLTYWVVYGVFSIAE-FFSDLFLSWFPFYYMLKCGF
          GYGASLLC.LIGF...AY.SIKA.ESP.K.D...WLTYW.VY..F...E..F.D.FL.WF.F.Y..K..F
Retrocopy GYGASLLCHLIGFICSAYASIKATESPSKDDNAIWLTYWLVYSIFGLVE<VFFDIFLFWFFFCYAEKFAF

Parental  LLWCMAPSPSNGAEMLYRRIIRPFFLKHESQMDNVVKDLKDKAKETADAIAKE
          LLW.M.P...NG...L..R.I.P.FL.H...MDN.V.DL...A..TA.....E
Retrocopy LLWFMLPMACNGSQIL*CRLICPIFLRHQTSMDNLVTDLSGWALNTAASLTQE

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1625 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1625 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 4 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010270	1 retrocopy	retro_etel_2208,
Macropus eugenii	ENSMEUG00000006088	4 retrocopies	retro_meug_1110, retro_meug_1625 , retro_meug_293, retro_meug_747,
Tursiops truncatus	ENSTTRG00000001691	1 retrocopy	retro_ttru_1155,
Drosophila melanogaster	FBgn0033906	1 retrocopy	retro_dmel_12,