RetrogeneDB ID: retro_meug_1110

Retrocopy location

• Organism: Wallaby (Macropus eugenii)
• Coordinates: Scaffold292230:16..372(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: None
• Aliases: None
• Status: NOVEL

Parental gene information

• Parental gene symbol: REEP5
• Ensembl ID: ENSMEUG00000006088
• Aliases: None
• Description: receptor accessory protein 5 [Source:HGNC Symbol;Acc:30077]

Sequence

>retro_meug_1110
TTGAAGCACCACTTTCAGAGGTTCCTGGAGCACAAAAGCATTGTCACCAATGTCCTGGGAAAGCTGGAGGAGGTCTCTGG
TGTCAAAAAGTACTATTTGGATACAGGTTCCATTGCCTTCCTAGCCCTCCATGTCATATTTGGCTATGGGACTACCCTTT
TCTGTAATCTCATCAGATTGATCTACCCAGTATATGCTTCCATCAAGGCCATGGAAAGTCCCAACAAAGATGGTGATACC
ATCCAGCTAACCTACTGGCTGGTATCTAGCATATTTGGGCCTGATTGAGTTTTTCTCTGACATCTTCCTTTTCTGGTTCC
TCTTCTACTATGCAGGGAAGGTGTGCCTTCTTGCTA

Alignment

ORF - retro_meug_1110 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 50.83 %
• Parental protein coverage: 68.21 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 2

Retrocopy - Parental Gene Alignment:

Parental  MRERFDQFLHQKNCMTDLLAKIEGKTGVNRSYIALGIIGLVALYLVFGYGASLLCNLIGFGYPAYVSIKA
          ....F..FL..K...T..L.K.E...GV...Y...G.I...AL...FGYG..L.CNLI...YP.Y.SIKA
Retrocopy LKHHFQRFLEHKSIVTNVLGKLEEVSGVKKYYLDTGSIAFLALHVIFGYGTTLFCNLIRLIYPVYASIKA

Parental  IESPNKEDDTQWLTYWVVYGVF-SIAEFFSDLFLSWFPFYYMLK-CGFLL
          .ESPNK..DT..LTYW.V...F....EFFSD.FL.WF.FYY..K.C.FLL
Retrocopy MESPNKDGDTIQLTYWLVSSIF>GLIEFFSDIFLFWFLFYYAGK>CAFLL

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq

Macropus eugenii was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_meug_1110 retrocopy.

TSS

Macropus eugenii was not studied using FANTOM5 data.

Lab

retro_meug_1110 was not experimentally validated.

Homology

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

---

Parental genes homology:

Parental genes homology involve 4 parental genes, and 7 retrocopies.

Species	Parental gene accession	Retrocopies number
Echinops telfairi	ENSETEG00000010270	1 retrocopy	retro_etel_2208,
Macropus eugenii	ENSMEUG00000006088	4 retrocopies	retro_meug_1110 , retro_meug_1625, retro_meug_293, retro_meug_747,
Tursiops truncatus	ENSTTRG00000001691	1 retrocopy	retro_ttru_1155,
Drosophila melanogaster	FBgn0033906	1 retrocopy	retro_dmel_12,