RetrogeneDB ID: | retro_ttru_524 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_2577:184168..185459(-) | ||
Located in intron of: | ENSTTRG00000010885 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNB1 | ||
Ensembl ID: | ENSTTRG00000002874 | ||
Aliases: | None | ||
Description: | cyclin B1 [Source:HGNC Symbol;Acc:1579] |
Percent Identity: | 88.97 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MALRITRN-TKINAENKAKVSMAGAKRVPVATVAASKPGLRPRTALGDIGNKVSEQPQAKLPLKKEAKTL |
MAL.ITRN...INAEN..KVSMAGAK.VPVATVAASKPGLRPRTALGDIGN.VS..PQAKLPLKKEAKTL | |
Retrocopy | MALWITRN<LNINAENNVKVSMAGAK*VPVATVAASKPGLRPRTALGDIGNRVSKEPQAKLPLKKEAKTL |
Parental | AAGKVIAKKLPKPLEKAPVPVPEPQPELDLEPEPEPETEPVKEEKLAPEPILVDTPSPSPMETSGCAPAE |
AAGKVIAKKLPKPLEK.PVP...P..E.DLEPEPEPE..PVKE.KL.PEPILVDTPSPSPMET.GCAPA. | |
Retrocopy | AAGKVIAKKLPKPLEKTPVPALKPHLEPDLEPEPEPE--PVKEQKLPPEPILVDTPSPSPMETPGCAPAG |
Parental | EYLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWL |
EY.CQAFSDVIL...DV.AEDGADPNLCSE.VKDIYAYLRQLEEEQAVRPKYLLG.EVTGNMRAILIDWL | |
Retrocopy | EYVCQAFSDVILTASDVEAEDGADPNLCSEDVKDIYAYLRQLEEEQAVRPKYLLGHEVTGNMRAILIDWL |
Parental | VQVQMKFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTK |
VQVQMKFRLLQE.MYMTVSII.RFMQD.CVPKKMLQLVGVTAMFIASKYEEMYPPEIGD.AFVTDNTYTK | |
Retrocopy | VQVQMKFRLLQEIMYMTVSIIGRFMQDSCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDSAFVTDNTYTK |
Parental | YQIRQME-MKILRALNFSLGRPLPLHFLRRASKIGEVDVELHTLAKYLMELTMLDYDMVHFPPSQIAAGA |
YQIRQME.M.ILRALNFSLGRPLPL..LRRASKIGEVDVELHTLAKYLMELT.L.Y.MVHFPPSQIAAGA | |
Retrocopy | YQIRQME<MNILRALNFSLGRPLPLRSLRRASKIGEVDVELHTLAKYLMELTTLNYHMVHFPPSQIAAGA |
Parental | FCLALKILDNGEWTPTLQHYLSYTEESLLLVMQHLAKNIIIVNRGLTKHMTIKNKYATSKHAKISILAQL |
FCLALKILDNGEW.PTLQHYLSYTEESLL.VMQHLAKNI..VNRGLTKHMTIKNKYA.SKH.KIS.LAQL | |
Retrocopy | FCLALKILDNGEWAPTLQHYLSYTEESLLVVMQHLAKNIVMVNRGLTKHMTIKNKYAASKHTKISTLAQL |
Parental | NSALVQDLAKAVAKV |
NSALVQDLAKAVAKV | |
Retrocopy | NSALVQDLAKAVAKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000007705 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014629 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012856 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014648 | 1 retrocopy | |
Procavia capensis | ENSPCAG00000002451 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000007685 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011817 | 4 retrocopies | |
Tursiops truncatus | ENSTTRG00000002874 | 2 retrocopies |
retro_ttru_524 , retro_ttru_59,
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