RetrogeneDB ID:

retro_ttru_524

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_2577:184168..185459(-)
Located in intron of:ENSTTRG00000010885
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CCNB1
Ensembl ID:ENSTTRG00000002874
Aliases:None
Description:cyclin B1 [Source:HGNC Symbol;Acc:1579]


Retrocopy-Parental alignment summary:






>retro_ttru_524
ATGGCGCTCTGGATCACCAGGAACTGAACATTAATGCTGAAAATAACGTGAAGGTCAGTATGGCAGGCGCAAAGTGAGTG
CCTGTGGCCACTGTTGCAGCCTCTAAGCCCGGGCTGAGGCCCAGAACAGCGCTTGGGGACATCGGTAACAGAGTCAGTAA
AGAGCCACAGGCCAAACTGCCCCTGAAAAAGGAAGCAAAAACTCTAGCTGCTGGAAAAGTTATTGCTAAAAAACTACCAA
AACCTCTGGAAAAGACACCTGTACCTGCGCTGAAGCCCCACCTGGAGCCGGATCTGGAGCCAGAGCCAGAACCCGAGCCT
GTTAAAGAACAGAAACTTCCCCCTGAGCCTATTTTGGTTGATACTCCCTCTCCAAGCCCCATGGAAACACCTGGCTGTGC
CCCTGCAGGAGAATATGTGTGTCAGGCTTTCTCTGATGTAATTCTTACAGCGAGTGATGTGGAGGCAGAAGATGGAGCGG
ATCCAAACCTTTGTAGTGAAGATGTAAAAGATATCTATGCTTATCTGAGACAACTGGAGGAAGAGCAAGCAGTCAGACCA
AAATACCTACTGGGTCATGAAGTGACTGGAAACATGAGAGCCATCCTAATTGACTGGCTAGTGCAGGTTCAAATGAAATT
CAGGTTACTCCAGGAGATCATGTACATGACTGTTTCCATTATTGGTCGGTTCATGCAGGATAGTTGTGTGCCCAAGAAGA
TGCTGCAGCTGGTTGGTGTCACTGCCATGTTTATTGCAAGCAAATACGAGGAAATGTACCCTCCAGAAATTGGTGACTCT
GCCTTTGTGACTGACAACACTTACACTAAGTACCAAATCAGACAGATGGAATGAATATTCTAAGAGCTTTAAATTTTAGT
CTGGGTCGCCCTCTACCCCTGCGTTCTCTTCGGAGAGCATCTAAGATTGGAGAGGTTGATGTTGAGCTACATACTTTGGC
CAAGTATCTGATGGAACTAACTACGTTGAACTACCATATGGTGCACTTTCCTCCTTCTCAGATTGCAGCGGGAGCTTTTT
GCTTAGCACTGAAAATTCTTGATAATGGTGAATGGGCACCAACTCTACAGCATTACCTGTCATACACTGAAGAATCCCTT
CTTGTTGTTATGCAACACCTGGCTAAGAATATAGTCATGGTGAATCGTGGGCTTACAAAGCACATGACTATCAAGAACAA
GTATGCCGCGTCTAAGCACACTAAGATCAGCACTCTAGCACAGCTGAATTCTGCACTAGTTCAAGATTTAGCCAAGGCTG
TGGCAAAGGTG

ORF - retro_ttru_524 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 88.97 %
Parental protein coverage: 100. %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalMALRITRN-TKINAENKAKVSMAGAKRVPVATVAASKPGLRPRTALGDIGNKVSEQPQAKLPLKKEAKTL
MAL.ITRN...INAEN..KVSMAGAK.VPVATVAASKPGLRPRTALGDIGN.VS..PQAKLPLKKEAKTL
RetrocopyMALWITRN<LNINAENNVKVSMAGAK*VPVATVAASKPGLRPRTALGDIGNRVSKEPQAKLPLKKEAKTL
ParentalAAGKVIAKKLPKPLEKAPVPVPEPQPELDLEPEPEPETEPVKEEKLAPEPILVDTPSPSPMETSGCAPAE
AAGKVIAKKLPKPLEK.PVP...P..E.DLEPEPEPE..PVKE.KL.PEPILVDTPSPSPMET.GCAPA.
RetrocopyAAGKVIAKKLPKPLEKTPVPALKPHLEPDLEPEPEPE--PVKEQKLPPEPILVDTPSPSPMETPGCAPAG
ParentalEYLCQAFSDVILAVNDVDAEDGADPNLCSEYVKDIYAYLRQLEEEQAVRPKYLLGREVTGNMRAILIDWL
EY.CQAFSDVIL...DV.AEDGADPNLCSE.VKDIYAYLRQLEEEQAVRPKYLLG.EVTGNMRAILIDWL
RetrocopyEYVCQAFSDVILTASDVEAEDGADPNLCSEDVKDIYAYLRQLEEEQAVRPKYLLGHEVTGNMRAILIDWL
ParentalVQVQMKFRLLQETMYMTVSIIDRFMQDNCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTK
VQVQMKFRLLQE.MYMTVSII.RFMQD.CVPKKMLQLVGVTAMFIASKYEEMYPPEIGD.AFVTDNTYTK
RetrocopyVQVQMKFRLLQEIMYMTVSIIGRFMQDSCVPKKMLQLVGVTAMFIASKYEEMYPPEIGDSAFVTDNTYTK
ParentalYQIRQME-MKILRALNFSLGRPLPLHFLRRASKIGEVDVELHTLAKYLMELTMLDYDMVHFPPSQIAAGA
YQIRQME.M.ILRALNFSLGRPLPL..LRRASKIGEVDVELHTLAKYLMELT.L.Y.MVHFPPSQIAAGA
RetrocopyYQIRQME<MNILRALNFSLGRPLPLRSLRRASKIGEVDVELHTLAKYLMELTTLNYHMVHFPPSQIAAGA
ParentalFCLALKILDNGEWTPTLQHYLSYTEESLLLVMQHLAKNIIIVNRGLTKHMTIKNKYATSKHAKISILAQL
FCLALKILDNGEW.PTLQHYLSYTEESLL.VMQHLAKNI..VNRGLTKHMTIKNKYA.SKH.KIS.LAQL
RetrocopyFCLALKILDNGEWAPTLQHYLSYTEESLLVVMQHLAKNIVMVNRGLTKHMTIKNKYAASKHTKISTLAQL
ParentalNSALVQDLAKAVAKV
NSALVQDLAKAVAKV
RetrocopyNSALVQDLAKAVAKV

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_524 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_524 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 12 retrocopies.

Species Parental gene accession Retrocopies number
Canis familiaris ENSCAFG000000077051 retrocopy
Cavia porcellus ENSCPOG000000146291 retrocopy
Myotis lucifugus ENSMLUG000000128561 retrocopy
Mustela putorius furoENSMPUG000000146481 retrocopy
Procavia capensis ENSPCAG000000024511 retrocopy
Sarcophilus harrisii ENSSHAG000000076851 retrocopy
Tupaia belangeri ENSTBEG000000118174 retrocopies
Tursiops truncatus ENSTTRG00000002874 2 retrocopies
retro_ttru_524 , retro_ttru_59,



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