RetrogeneDB ID: | retro_tbel_4531 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_88516:306..1223(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000011817 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 85.53 % |
Parental protein coverage: | 70.77 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 6 |
Parental | PMETSGCAPAEEYLCQAFSDVILAVSDVDAEDG-ADPNLCSEYVKDIYAYLRQLEE-EQAVRPK-YL-LG |
PM...G....E.Y..Q..SDVILA.....AED...DPNLC.E.VKD.YAY..QLEE.EQAVRPK.YL.LG | |
Retrocopy | PMRHLGSDHPEDYFVQLSSDVILAGNYGTAEDE<SDPNLCGECVKDVYAY*DQLEE>EQAVRPK>YL>LG |
Parental | REVTGN-MRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVP-KKMLQLVGVTAMFIASKYEEMY |
REVTGN...AILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVP.KKMLQLV.VTA.FIASK.EEMY | |
Retrocopy | REVTGN>LKAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVP<KKMLQLVSVTAIFIASKFEEMY |
Parental | PPEIGDFAFVTNNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKVGEVDVEQHTLAKYLMELTML |
PPEIGDFAFVTNNTYTKHQIRQMEMKILRALNFGLG.P.PLHFL.RA.KVGEV.V.QHT.AKYLMELTML | |
Retrocopy | PPEIGDFAFVTNNTYTKHQIRQMEMKILRALNFGLGHPQPLHFLQRAFKVGEVNVGQHTPAKYLMELTML |
Parental | DYDMVHFPPSQIAAGAFCLALKILDNGEWTPTLQHYLSYTEESLLPVMQHLAKNIVMVNRGLTKHMTIKN |
DYDMVHFPPSQIAAGAFCLALKILDNGEWTPTLQHYLSYTEESLLPVMQHLAKNIVMVNRG.TKH.TIKN | |
Retrocopy | DYDMVHFPPSQIAAGAFCLALKILDNGEWTPTLQHYLSYTEESLLPVMQHLAKNIVMVNRGFTKHTTIKN |
Parental | KYATSKHAKISTLSQMNSALVQDLAKAVAKV |
KYATSKHAKISTL.QMNSALVQDLAKAVAKV | |
Retrocopy | KYATSKHAKISTLAQMNSALVQDLAKAVAKV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014239 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000007705 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016075 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014629 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005724 | 2 retrocopies | |
Felis catus | ENSFCAG00000001572 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012856 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014648 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041431 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000002451 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018635 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007685 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011817 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000008928 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002874 | 2 retrocopies |