RetrogeneDB ID: | retro_tbel_4185 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_70776:3608..4381(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000011817 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.85 % |
Parental protein coverage: | 59.63 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | NSSPEPILVDTSSSSPMETSGCAPAEEYLCQAFSDVILAVSDVDAEDGADPNLCSEYVKDIYAYLRQLEE |
NS.PEPILVDTS.S.PMETSGCAPAE.YLC.AFSDVILAVSDVD.EDGADPNLCSEYVKD..AYLR.LEE | |
Retrocopy | NSLPEPILVDTSPS-PMETSGCAPAERYLCEAFSDVILAVSDVDPEDGADPNLCSEYVKDTCAYLR*LEE |
Parental | EQAVRPKYLLGREVTGNMRAILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNCVPKKMLQLVGVTAMF |
EQAVRPKYLLG.E.TGNMRAILIDW.VQVQMKF.LLQE..YMTVSIID..M.NNCV.KKMLQLVGVTAMF | |
Retrocopy | EQAVRPKYLLGWEITGNMRAILIDWVVQVQMKFWLLQEAKYMTVSIID*SMRNNCVLKKMLQLVGVTAMF |
Parental | IASKYEEM--YPPEI-GDFAFVTNNTYTKHQIRQMEMKILRALNFGLGRPLPLHFLRRASKVGEVDVEQH |
.ASKYEEM...PP...GDFAF.TNNTYTKHQIRQMEMK.LR.LNFGLGRPL.L.FL..A.KVGEV.VEQH | |
Retrocopy | VASKYEEMCPTPPKL<GDFAFATNNTYTKHQIRQMEMKSLRVLNFGLGRPLSLLFLQQAFKVGEVNVEQH |
Parental | TLAKYLMELTMLDYDMVHFPPSQIAAGAFCLALKILDNGEWTPTLQHYLS |
TLAK.LMELTMLDYDMVH.PPSQIAAG.FCLALKILDNGE.TPTLQ.Y.. | |
Retrocopy | TLAKHLMELTMLDYDMVHSPPSQIAAGDFCLALKILDNGERTPTLQYYIT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000014239 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000007705 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000016075 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000014629 | 1 retrocopy | |
Erinaceus europaeus | ENSEEUG00000005724 | 2 retrocopies | |
Felis catus | ENSFCAG00000001572 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000012856 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000014648 | 1 retrocopy | |
Mus musculus | ENSMUSG00000041431 | 5 retrocopies | |
Procavia capensis | ENSPCAG00000002451 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000018635 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000007685 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000011817 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000008928 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000002874 | 2 retrocopies |