Parental gene: | BGIOSGA004342 |
| Aliases: | None |
| Description: | None |
| Organism: | Rice subsp. indica (Oryza sativa indica) |
| Coordinates: | 1:33170803..33175562(+) |
>BGIOSGA004342
ATGGCCGCCTCCAGAAGCGAGCTTCTCCGGCCGGCATTCGGCGAGCCCTCTCCTTCGCTAGGACCATTCGTCGTTAACCC
TCACACCTGCAGCTACAGGTGGTGGCAGAAGTTCCTGATCGTGCTGGTGCTGTACACGGCGTGGGCGTCGCCGTTCGAGC
TGGCCATGGAGAAGTCGGCCTCGGCCGCGCTCGCCGTCACGGAGCTGGTGGTCGACGCCTTCTTCGCCGTCGACATTGCC
GTCTCCTTCTTCGTGGCGTACCGCGACGCCTCCACCGGCCTCCTCGTAACCGACCGCAAGAAGATCGCCACCAGGCACCT
GGCACGACCATGCTTGGCGCTGGATGTCGCCTCAACGATTCCTTTACAGATGATCTACCGGATAGTGAGCGGCAAAAGAC
AAGCATTGTATGGGTTCCTCAATCTTCTCCGGCTCTGGCGACTACGGCGCGTCAGCAAGCTCTTTGCAAGGTTGGAGAAG
GACATTAGATTCAGTTACTTGTGGACCAGGCTTATCAAGCTCCTCTACGTGACGCTGTTCGCAGTGCACTTCGCCTCGTG
CATCTACCTGTGGATGGCGTTCCACCACAAGGCGAAGGAGCTGACGTGGATCGGCAGCCAGTTCCACGGCTTCGAGGACC
GCAGCGTGTGGTTCTGCTACACCTGCGCCGTGTACTGGTCCATCACCACGCTCGCCACCGTCGGCTACGGCGACCTGCAC
GCCGCCAACACGGGCGAGATGCTGTTCAGCATCGCCTTCATGCTCTTCAACATGGGCCTCACCTCCTACATCATCGGCAA
CATCACCAACCTCGTCGTCCACGAAACCACCAACACCTTCAAGATGAGGGACATGGTGCAGAGGACGTCGGTGTTCGGGA
GAACGAACCGGCTGCCGGTGGCGATGAGGGAGCAGATGATGGAAAGCCTGCAGCTCAGGTTCAGGGCGGAGGAGCAGCTG
CAGCAGGAGATGCTGTCCGAGCTGCCCAAGGCCGTGCGGTCAGGCATCGCGCAGCACATGTTCAGGGGGGCGGTCCAGAG
CTGCTACCTGTTCCAGGGCGTCTCCGACAAGCTCGTCCTGCCGCTGGTCGCGGAGATGAAGGCAGAGTCATTTCCCCCCA
AGGCGGATATCATCCTGGAGAACGAGGCTTCGACGGACTGCTACATCATCGTGTCTGGTGAAGTGGAGGTATTGACAACC
CTTGAGGATGGTACAGAGAAGCAAGTGATGAGAATAGGGCCACGGGGAATGGCAGGGGAAATTGGGGTGATGTTCAACAT
CCCACAGCCGTTCACCATCCGGAGCAGAAAGCTCACGCAGCTCGTCCGTATAAGCCACAGCCATATGGTCTCGACCATCC
GGCCTAACACTGCAGATGGGGTCGTTGTATTCTCCAATTTTGTTCTGTACCTTGAATCTCTGAAGGTGAAGGCAAAGGAA
ACAGCCTTTGTTAGGGATCATCTTCGCAATGGCTACTCCACGGTATTAGGAAGTGCAACCATGTTTGATGTAGATGAATC
CAAAGAGTCAGCTCACAAAATGTTGCCATGCAAAGAACCCAAACGGGTATCTATTCATGAACACCTCTTAAATGGGACTG
GCACAGCACTGAACGGCTCATCTGGGAAGCTCGTCATACTGCCAGATTCTATGCAAGATCTGATGAAACTTTCAGAAAAG
AAGTTTGGGAAGGCAGCGAGAGGGATTCTCACCGTGGGAGGTGCCGAGGTAGAGGACATTGAAGTGATAAGAGATGGCGA
TCACCTGTTCTTTAGTTGGTAG
ATGGCCGCCTCCAGAAGCGAGCTTCTCCGGCCGGCATTCGGCGAGCCCTCTCCTTCGCTAGGACCATTCGTCGTTAACCC
TCACACCTGCAGCTACAGGTGGTGGCAGAAGTTCCTGATCGTGCTGGTGCTGTACACGGCGTGGGCGTCGCCGTTCGAGC
TGGCCATGGAGAAGTCGGCCTCGGCCGCGCTCGCCGTCACGGAGCTGGTGGTCGACGCCTTCTTCGCCGTCGACATTGCC
GTCTCCTTCTTCGTGGCGTACCGCGACGCCTCCACCGGCCTCCTCGTAACCGACCGCAAGAAGATCGCCACCAGGCACCT
GGCACGACCATGCTTGGCGCTGGATGTCGCCTCAACGATTCCTTTACAGATGATCTACCGGATAGTGAGCGGCAAAAGAC
AAGCATTGTATGGGTTCCTCAATCTTCTCCGGCTCTGGCGACTACGGCGCGTCAGCAAGCTCTTTGCAAGGTTGGAGAAG
GACATTAGATTCAGTTACTTGTGGACCAGGCTTATCAAGCTCCTCTACGTGACGCTGTTCGCAGTGCACTTCGCCTCGTG
CATCTACCTGTGGATGGCGTTCCACCACAAGGCGAAGGAGCTGACGTGGATCGGCAGCCAGTTCCACGGCTTCGAGGACC
GCAGCGTGTGGTTCTGCTACACCTGCGCCGTGTACTGGTCCATCACCACGCTCGCCACCGTCGGCTACGGCGACCTGCAC
GCCGCCAACACGGGCGAGATGCTGTTCAGCATCGCCTTCATGCTCTTCAACATGGGCCTCACCTCCTACATCATCGGCAA
CATCACCAACCTCGTCGTCCACGAAACCACCAACACCTTCAAGATGAGGGACATGGTGCAGAGGACGTCGGTGTTCGGGA
GAACGAACCGGCTGCCGGTGGCGATGAGGGAGCAGATGATGGAAAGCCTGCAGCTCAGGTTCAGGGCGGAGGAGCAGCTG
CAGCAGGAGATGCTGTCCGAGCTGCCCAAGGCCGTGCGGTCAGGCATCGCGCAGCACATGTTCAGGGGGGCGGTCCAGAG
CTGCTACCTGTTCCAGGGCGTCTCCGACAAGCTCGTCCTGCCGCTGGTCGCGGAGATGAAGGCAGAGTCATTTCCCCCCA
AGGCGGATATCATCCTGGAGAACGAGGCTTCGACGGACTGCTACATCATCGTGTCTGGTGAAGTGGAGGTATTGACAACC
CTTGAGGATGGTACAGAGAAGCAAGTGATGAGAATAGGGCCACGGGGAATGGCAGGGGAAATTGGGGTGATGTTCAACAT
CCCACAGCCGTTCACCATCCGGAGCAGAAAGCTCACGCAGCTCGTCCGTATAAGCCACAGCCATATGGTCTCGACCATCC
GGCCTAACACTGCAGATGGGGTCGTTGTATTCTCCAATTTTGTTCTGTACCTTGAATCTCTGAAGGTGAAGGCAAAGGAA
ACAGCCTTTGTTAGGGATCATCTTCGCAATGGCTACTCCACGGTATTAGGAAGTGCAACCATGTTTGATGTAGATGAATC
CAAAGAGTCAGCTCACAAAATGTTGCCATGCAAAGAACCCAAACGGGTATCTATTCATGAACACCTCTTAAATGGGACTG
GCACAGCACTGAACGGCTCATCTGGGAAGCTCGTCATACTGCCAGATTCTATGCAAGATCTGATGAAACTTTCAGAAAAG
AAGTTTGGGAAGGCAGCGAGAGGGATTCTCACCGTGGGAGGTGCCGAGGTAGAGGACATTGAAGTGATAAGAGATGGCGA
TCACCTGTTCTTTAGTTGGTAG
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Oryza brachyantha | OB01G37960 | ortholog_one2one | 1 retrogene | |
| Oryza barthii | OBART01G29050 | ortholog_one2one | 1 retrogene | |
| Oryza glumaepatula | OGLUM01G33050 | ortholog_one2one | 1 retrogene | |
| Oryza nivara | ONIVA01G33130 | ortholog_one2one | 1 retrogene | |
| Oryza rufipogon | ORUFI01G32100 | ortholog_one2one | 1 retrogene | |
| Oryza sativa japonica | OS01G0718700 | ortholog_one2one | 1 retrogene | |
| Setaria italica | Si003861m.g | ortholog_many2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_oind_32 | 80.68 | 99.49 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all BGIOSGA004342 retrocopies