Parental gene:

ONIVA01G33130

Aliases:None
Description:None
Organism:Indian wild rice (Oryza nivara)
Coordinates:1:28953754..28958789(+)


>ONIVA01G33130
ATGGCAAGACAAAGCAGCACTGCAGGGGCATCCATACTACCGGTGACGAATATCGGCATGGCCGCCTCCAGAAGCGAGCT
TCTCCGGCCGGCATTCGGCGAGCCCTCTCCTTCGCTAGGACCATTCGTCGTTAACCCTCACACCTGCAGCTACAGGTGGT
GGCAGAAGTTCCTGATCGTGCTGGTGCTGTACACGGCGTGGGCGTCGCCGTTCGAGCTGGCCATGGAGAAGTCGGCCTCG
GCCGCGCTCGCCGTCACGGAGCTGGTGGTCGACGCCTTCTTCGCCGTCGACATTGCCGTCTCCTTCTTCGTGGCGTACCG
CGACGCCTCCACCGGCCTCCTCGTAACCGACCGCAAGAAGATCGCCACCAGACAAGCATTGTATGGGTTCCTCAATCTTC
TCCGGCTCTGGCGACTACGGCGCGTCAGCAAGCTCTTTGCAAGGTTGGAGAAGGACATTAGATTCAGTTACTTGTGGACC
AGGCTTATCAAGCTCCTCTACGTGACGCTGTTCGCAGTGCACTTCGCCTCGTGCATCTACCTGTGGATGGCGTTCCACCA
CAAGGCGAAGGAGCTGACGTGGATCGGCAGCCAGTTCCACGGCTTCGAGGACCGCAGCGTGTGGTTCTGCTACACCTGCG
CCGTGTACTGGTCCATCACCACGCTCGCCACCGTCGGCTACGGCGACCTGCACGCCGCCAACACGGGCGAGATGCTGTTC
AGCATCGCCTTCATGCTCTTCAACATGGGCCTCACCTCCTACATCATCGGCAACATCACCAACCTCGTCGTCCACGAAAC
CACCAACACCTTCAAGATGAGGGACATGGTGCAGAGGACGTCGGTGTTCGGGAGAACGAACCGGCTGCCGGTGGCGATGA
GGGAGCAGATGATGGAAAGCCTGCAGCTCAGGTTCAGGGCGGAGGAGCAGCTGCAGCAGGAGATGCTGTCCGAGCTGCCC
AAGGCCGTGCGGTCAGGCATCGCGCAGCACATGTTCAGGGGGGCGGTCCAGAGCTGCTACCTGTTCCAGGGCGTCTCCGA
CAAGCTCGTCCTGCCGCTGGTCGCGGAGATGAAGGCAGAGTCATTTCCCCCCAAGGCGGATATCATCCTGGAGAACGAGG
CTTCGACGGACTGCTACATCATCGTGTCTGGTGAAGTGGAGGTATTGACAACCCTTGAGGATGGTACAGAGAAGCAAGTG
ATGAGAATAGGGCCACGGGGAATGGCAGGGGAAATTGGGGTGATGTTCAACATCCCACAGCCGTTCACCATCCGGAGCAG
AAAGCTCACGCAGCTCGTCCGTATAAGCCACAGCCATATGGTCTCGACCATCCGGCCTAACACTGCAGATGGGGTCGTTG
TATTCTCCAATTTTGTTCTGTACCTTGAATCTCTGAAGGTGAAGGCAAAGGAAACAGCCTTTGTTAGGGATCATCTTCGC
AATGGCTACTCCACGGTATTAGGAAGTGCAACCATGTTTGATGTAGATGAATCCAAAGAGTCAGCTCACAAAATGTTGCC
ATGCAAAGAACCCAAACGGGTATCTATTCATGAACACCTCTTAAATGGGACTGGCACAGCACTGAACGGCTCATCTGGGA
AGCTCGTCATACTGCCAGATTCTATGCAAGATCTGATGAAACTTTCAGAAAAGAAGTTTGGGAAGGCAGCGAGAGGGATT
CTCACCGTGGGAGGTGCCGAGGTAGAGGACATTGAAGTGATAAGAGATGGCGATCACCTGTTCTTTAGTTGGTAG

Species Parental gene accession Homology type Retrogenes number
Oryza sativa indica BGIOSGA004342 ortholog_one2one 1 retrogene
retro_oind_32,
Oryza brachyantha OB01G37960 ortholog_one2one 1 retrogene
retro_obra_2,
Oryza barthii OBART01G29050 ortholog_one2one 1 retrogene
retro_obar_20,
Oryza glumaepatula OGLUM01G33050 ortholog_one2one 1 retrogene
retro_oglu_27,
Oryza rufipogon ORUFI01G32100 ortholog_one2one 1 retrogene
retro_oruf_17,
Oryza sativa japonica OS01G0718700 ortholog_one2one 1 retrogene
retro_osat_1,
Setaria italica Si003861m.g ortholog_many2many 1 retrogene
retro_sita_40,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_oniv_11 80.00 78.77
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Download FASTA sequences of all ONIVA01G33130 retrocopies