Parental gene:

Si003861m.g

Aliases:None
Description:None
Organism:Foxtail millet (Setaria italica)
Coordinates:5:35360170..35362824(+)


>Si003861m.g
ATGGCAAGACCAGCGGCGGACGAGGGAGAAAGCTGGACACTGCCGGCGGCGAACAACGGCAGCCGCGGCATTTCCGGCGA
GCTCCTCCCTGCGTTCGGTGAACCCTTCCCTTGTTCCGTCGGAAACACCATAATCAACCCTTACGACGGCCGGTACAGGT
GGTGGCAGGCGTTCCTGATCGTGCTGGTGCTGTACTCGGCGTGGGCGTCGCCGTTCGAGCTGGCCCTCGAGAAGGCCGCC
ACCGCGCCGCTCCTCGTCGTGGACCTGGTCGTCGACGTCTTCTTCGCCGCCGACATCGCCGTCTCCTTCTTCGTCACCTA
CTTCGACAGGTCCGCCAACCTCTTCGTCGACGACCGAAGGAAGATCGCCACGAGGTACCTGACGCGGCCGTGGTTCGCCA
TGGACGTGGCCTCGACGGTCCCGTTCCAGATCATCTACCGGCTGGTCAGCGGCAGCAGCACCGGGTTCAGGTACCTCAAT
CTTCTCCGGCTGTGGAGGCTACGGCGCGTCAGTAAGCTCTTTGCAAGATGGGAGAAGGACATCAGATTCAACTACTTCTA
CACCAGGCTCGTAAAGCTCATCGGCGTGACGCTGTTCGCGCTGCACTCGTCGGCGTGCATCTTCCTGTGGATGGCGTTCC
ACCACCGGGACAAGGAGCACACGTGGCTGGGAAGCCAGGTGCGCGACTTCACGGACCGCAGCGTCTGGGTCGGCTACACC
TACGCCGTGTACTGGTCCATCACCACGCTCGCCACCGTCGGCTACGGCGACCTGCACGCCGTGAACCCCGGCGAGATGGC
GTTCGCCACCGGCTACATGCTCTTCAACCTCGGCCTGACCTCCTACATCATCGGCAACATGACCAACCTCGTCGTCCACG
CCGCCACCAACACCTTCAGGATGAGGGACATGGTGCGGCGGGTCTCGACGTTCGGGGCCGCGAACCAGCTGCCGCGGGAG
CTGAGGGAGCAGATGATGGCGAGCGCGCAGCTCAGGTTCAACGCCGGGGAGGTGGTCCAGCAGCAGCTGCTGTCCGACCT
GCCCAGGGCGCTCCGGTCCGGGGTCGCGCAGCACCTGTTCGGGGACACGGTGCAGCGCTGCTACCTGTTCCAGGGCGTCT
CCAGCGGCCTCGTCGTGCAGCTGGTTTCAGAGATGGTGGCGGGGTATTTCCCCCCGAAGGCGGACATTGTCCTGCAGAAT
GAGACCTCGACGGACTGCTACATCGTCGTGTCCGGTGCAGTGGACGTGTTGGCAACTGCTGACGATGGAACAGAGAAGCT
TGTGATGAAGGTAGGGCCGCACGGCATGGCAGGGGAAATGGGGGTGATCTTTGGCACCCCACAGCCGTTCACCGTCCGGA
GCAGGAGGCTCACGCAGGTTGTGCGCATCAGCCGGAGCCATCTTCTGCAGATACTACGGCCCAACACTGCAGACGCGGAC
ACTGTACACGCCAATTTTGTTCAGTACCTCAGATCTCTGAGGGAACACGTTGCGGTGGATGCGCCATTTTTCAGGGAGAT
CCTTTCCGACACAGGCCTGGATCGGCTTCAGAACTATGCCATATTTCAAAAGCAGTTGCACGAAGGCGCCAGGATCGTTC
GGGACCAAGATGCCAGGCTTGGCTCCCAGCAACACGAAGAGACAGCTCCCTGCAACATGTTGCTGCGTCGACAACACAAG
CCACGAGTGGTCATCCATGATCACTTCCCCGGCGATGGCACTGAGAAGACTCGGAACCGTGCAGGGGGGAAGCTCGTCTG
CCTTCCGGATTCGCTGCAAGAGCTGATGAAAGTTGCCGAGGCGAAGTTTGGGAAGGCGGTGAGGACGGTGCTCACCGTCG
ACGGCGCCGAGGTGGAAGACGTCGCCGTGCTAAGAGACGGGGATCACCTGGTGCTGTGTTGGTAG

Species Parental gene accession Homology type Retrogenes number
Oryza sativa indica BGIOSGA004342 ortholog_many2many 1 retrogene
retro_oind_32,
Oryza brachyantha OB01G37960 ortholog_many2many 1 retrogene
retro_obra_2,
Oryza barthii OBART01G29050 ortholog_many2many 1 retrogene
retro_obar_20,
Oryza glumaepatula OGLUM01G33050 ortholog_many2many 1 retrogene
retro_oglu_27,
Oryza nivara ONIVA01G33130 ortholog_many2many 1 retrogene
retro_oniv_11,
Oryza rufipogon ORUFI01G32100 ortholog_many2many 1 retrogene
retro_oruf_17,
Oryza sativa japonica OS01G0718700 ortholog_many2many 1 retrogene
retro_osat_1,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sita_40 61.90 55.84
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Download FASTA sequences of all Si003861m.g retrocopies