Parental gene:

RPL21, ENSACAG00000003169

Aliases:None
Description:None
Organism:Anole lizard (Anolis carolinensis)
Coordinates:GL343306.1:1040194..1045766(+)


>ENSACAG00000003169
ATGACCAACACAAAGGGGAAGAGGAGGGGGACACGTTACATGTTCTCAAGGCCCTTCCGCAAACATGGTGTTGTCCCGCT
TGCAACCTACATGCGCATCTATAAGAAGGGTGATATTGTTGACATCAAGGGCATGGGCACAGTTCAGAAAGGCATGCCAC
ACAAATGCTACCATGGCAAGACGGGAAGAGTATATAACATTACTCAGCATGCTGTGGGCATTATTGTGAACAAGAAGGTT
AAGGGCAAAATTCTTGCCAAGAGAATTAATGTGCGCATTGAGCATATTAAGCACTCAAAGAGCAGAGATAGCTTTTTGCA
GCGTGTGAAGGAAAATGAAAGGAAGAAGAAGGAAGCAAAGGAAAAGGGCACATGGTTTGAACTCAAACGCCAGCCTGCTC
AGCCAAGAGAAGCACATTTTGTGAGGACCGGTGGCAAAGAGCCAGAGCTTCTGGAGCCAATTCCATATGAATTCATGGCA
TAA

Library Parental gene expression (RPM)
SRP009831_adrenal 3054 .25 RPM
SRP009831_brain 334 .84 RPM
SRP009831_dewlap 430 .26 RPM
SRP009831_embryo 862 .86 RPM
SRP009831_heart 698 .65 RPM
SRP009831_liver 635 .95 RPM
SRP009831_lung 506 .70 RPM
SRP009831_ovary 237 .94 RPM
SRP009831_skeletal_muscle 210 .34 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000001648 possible_ortholog 5 retrogenes
retro_btau_1383, retro_btau_194, retro_btau_209, retro_btau_93, retro_btau_976,
Choloepus hoffmanni ENSCHOG00000007867 possible_ortholog 6 retrogenes
retro_chof_1472, retro_chof_1596, retro_chof_2421, retro_chof_2454, retro_chof_266, retro_chof_572,
Callithrix jacchus ENSCJAG00000019355 possible_ortholog 1 retrogene
retro_cjac_152,
Cavia porcellus ENSCPOG00000008784 possible_ortholog 3 retrogenes
retro_cpor_2, retro_cpor_26, retro_cpor_41,
Equus caballus ENSECAG00000010661 possible_ortholog 5 retrogenes
retro_ecab_16, retro_ecab_24, retro_ecab_39, retro_ecab_88, retro_ecab_90,
Felis catus ENSFCAG00000006750 possible_ortholog 1 retrogene
retro_fcat_64,
Latimeria chalumnae ENSLACG00000012678 ortholog_one2one 1 retrogene
retro_lcha_32,
Loxodonta africana ENSLAFG00000003677 possible_ortholog 11 retrogenes
retro_lafr_1167, retro_lafr_308, retro_lafr_331, retro_lafr_583, retro_lafr_63, retro_lafr_652, retro_lafr_738, retro_lafr_740, retro_lafr_856, retro_lafr_89, retro_lafr_97,
Myotis lucifugus ENSMLUG00000010093 possible_ortholog 46 retrogenes
retro_mluc_1066, retro_mluc_1079, retro_mluc_1138, retro_mluc_1164, retro_mluc_1171, retro_mluc_1219, retro_mluc_1274, retro_mluc_1279, retro_mluc_1307, retro_mluc_1323, retro_mluc_1379, retro_mluc_1382, retro_mluc_1409, retro_mluc_1413, retro_mluc_1469, retro_mluc_1481, retro_mluc_1525, retro_mluc_162, retro_mluc_1647, retro_mluc_1753, retro_mluc_1803, retro_mluc_1849, retro_mluc_1862, retro_mluc_1929, retro_mluc_1969, retro_mluc_1981, retro_mluc_2044, retro_mluc_2077, retro_mluc_2109, retro_mluc_2121, retro_mluc_2212, retro_mluc_230, retro_mluc_2335, retro_mluc_2338, retro_mluc_2436, retro_mluc_2592, retro_mluc_27, retro_mluc_279, retro_mluc_360, retro_mluc_503, retro_mluc_554, retro_mluc_620, retro_mluc_631, retro_mluc_806, retro_mluc_961, retro_mluc_97,
Macaca mulatta ENSMMUG00000023368 possible_ortholog 2 retrogenes
retro_mmul_288, retro_mmul_45,
Macaca mulatta ENSMMUG00000029574 possible_ortholog 2 retrogenes
retro_mmul_1289, retro_mmul_219,
Monodelphis domestica ENSMODG00000008923 possible_ortholog 1 retrogene
retro_mdom_156,
Mustela putorius furo ENSMPUG00000009353 possible_ortholog 23 retrogenes
retro_mputfur_1083, retro_mputfur_1117, retro_mputfur_1203, retro_mputfur_1342, retro_mputfur_1345, retro_mputfur_1498, retro_mputfur_196, retro_mputfur_208, retro_mputfur_248, retro_mputfur_256, retro_mputfur_310, retro_mputfur_311, retro_mputfur_398, retro_mputfur_580, retro_mputfur_584, retro_mputfur_699, retro_mputfur_700, retro_mputfur_796, retro_mputfur_806, retro_mputfur_903, retro_mputfur_934, retro_mputfur_991, retro_mputfur_992,
Mus musculus ENSMUSG00000041453 possible_ortholog 101 retrogenes
retro_mmus_1012, retro_mmus_1046, retro_mmus_1057, retro_mmus_1083, retro_mmus_1123, retro_mmus_1199, retro_mmus_1287, retro_mmus_1354, retro_mmus_1461, retro_mmus_1475, retro_mmus_1529, retro_mmus_1561, retro_mmus_1572, retro_mmus_1596, retro_mmus_1617, retro_mmus_1641, retro_mmus_1644, retro_mmus_17, retro_mmus_1714, retro_mmus_1739, retro_mmus_1762, retro_mmus_1797, retro_mmus_1848, retro_mmus_1860, retro_mmus_1862, retro_mmus_1875, retro_mmus_1897, retro_mmus_1915, retro_mmus_1931, retro_mmus_1936, retro_mmus_1994, retro_mmus_2042, retro_mmus_2049, retro_mmus_2101, retro_mmus_2130, retro_mmus_2176, retro_mmus_2179, retro_mmus_2185, retro_mmus_2214, retro_mmus_2233, retro_mmus_2237, retro_mmus_2238, retro_mmus_2279, retro_mmus_2309, retro_mmus_2312, retro_mmus_2335, retro_mmus_2344, retro_mmus_2395, retro_mmus_2447, retro_mmus_2517, retro_mmus_2567, retro_mmus_2585, retro_mmus_2598, retro_mmus_266, retro_mmus_2662, retro_mmus_2698, retro_mmus_2707, retro_mmus_2778, retro_mmus_2808, retro_mmus_2853, retro_mmus_2874, retro_mmus_2945, retro_mmus_2980, retro_mmus_3035, retro_mmus_3055, retro_mmus_3085, retro_mmus_3103, retro_mmus_3112, retro_mmus_3220, retro_mmus_3252, retro_mmus_3261, retro_mmus_3295, retro_mmus_3318, retro_mmus_3328, retro_mmus_333, retro_mmus_3341, retro_mmus_3446, retro_mmus_3545, retro_mmus_3581, retro_mmus_3712, retro_mmus_397, retro_mmus_400, retro_mmus_401, retro_mmus_598, retro_mmus_601, retro_mmus_606, retro_mmus_663, retro_mmus_734, retro_mmus_735, retro_mmus_758, retro_mmus_782, retro_mmus_806, retro_mmus_835, retro_mmus_862, retro_mmus_883, retro_mmus_918, retro_mmus_932, retro_mmus_940, retro_mmus_957, retro_mmus_993, retro_mmus_998,
Nomascus leucogenys ENSNLEG00000000327 possible_ortholog 6 retrogenes
retro_nleu_112, retro_nleu_1144, retro_nleu_26, retro_nleu_713, retro_nleu_95, retro_nleu_951,
Oryctolagus cuniculus ENSOCUG00000002506 possible_ortholog 10 retrogenes
retro_ocun_104, retro_ocun_122, retro_ocun_125, retro_ocun_159, retro_ocun_163, retro_ocun_186, retro_ocun_198, retro_ocun_209, retro_ocun_232, retro_ocun_86,
Otolemur garnettii ENSOGAG00000033936 possible_ortholog 4 retrogenes
retro_ogar_1787, retro_ogar_2621, retro_ogar_3093, retro_ogar_416,
Otolemur garnettii ENSOGAG00000034423 possible_ortholog 1 retrogene
retro_ogar_3296,
Pongo abelii ENSPPYG00000005233 possible_ortholog 7 retrogenes
retro_pabe_1173, retro_pabe_1404, retro_pabe_1437, retro_pabe_3494, retro_pabe_52, retro_pabe_54, retro_pabe_65,
Pongo abelii ENSPPYG00000006167 possible_ortholog 2 retrogenes
retro_pabe_1617, retro_pabe_327,
Pan troglodytes ENSPTRG00000005728 possible_ortholog 1 retrogene
retro_ptro_66,
Rattus norvegicus ENSRNOG00000000957 possible_ortholog 13 retrogenes
retro_rnor_227, retro_rnor_298, retro_rnor_319, retro_rnor_329, retro_rnor_330, retro_rnor_333, retro_rnor_365, retro_rnor_366, retro_rnor_416, retro_rnor_5, retro_rnor_79, retro_rnor_81, retro_rnor_82,
Sarcophilus harrisii ENSSHAG00000000845 possible_ortholog 11 retrogenes
retro_shar_224, retro_shar_446, retro_shar_499, retro_shar_531, retro_shar_534, retro_shar_601, retro_shar_664, retro_shar_67, retro_shar_683, retro_shar_729, retro_shar_757,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_acar_153 73.48 81.88
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Download FASTA sequences of all ENSACAG00000003169 retrocopies