RetrogeneDB ID: | retro_btau_522 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 13:16262486..16263362(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSBTAG00000037516 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EIF4A2 | ||
Ensembl ID: | ENSBTAG00000014724 | ||
Aliases: | None | ||
Description: | Eukaryotic initiation factor 4A-II [Source:UniProtKB/Swiss-Prot;Acc:Q3SZ65] |
Percent Identity: | 98.29 % |
Parental protein coverage: | 71.74 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA |
.IQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWI.MFVLDEA | |
Retrocopy | KIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIIMFVLDEA |
Parental | DEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVE |
DEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVE | |
Retrocopy | DEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKEELTLEGIKQFYINVE |
Parental | REEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSR |
REEWKLDTLCDLYETLTITQA...LNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSR | |
Retrocopy | REEWKLDTLCDLYETLTITQAXXXLNTRRKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSR |
Parental | VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTT |
VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTT | |
Retrocopy | VLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINFVTEEDKRILRDIETFYNTT |
Parental | VEEMPMNVADLI |
VEEMPMNVADLI | |
Retrocopy | VEEMPMNVADLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .72 RPM | 180 .60 RPM |
ERP005899_muscle | 0 .95 RPM | 260 .83 RPM |
SRP017611_brain | 1 .74 RPM | 287 .78 RPM |
SRP017611_kidney | 1 .48 RPM | 227 .01 RPM |
SRP017611_liver | 0 .98 RPM | 105 .94 RPM |
SRP030211_testis | 1 .82 RPM | 125 .70 RPM |