Parental gene:

JOSD1, ENSBTAG00000010171

Aliases:None
Description:Josephin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q5EAE5]
Organism:Cow (Bos taurus)
Coordinates:5:110829051..110839745(-)


>ENSBTAG00000010171
ATGAGTTGCGTGCCATGGAAAGGAGACAAGGTCAAATCTGAATCATTGGAGCTGCCCCAGGCAGCACCCCCACAAATCTA
CCATGAGAAACAGCGCAGGGAGCTCTGTGCTCTGCACGCCCTCAATAACGTCTTCCAGGACAGCAATGCCTTCACCCGGG
AAACGCTGCAAGAGATTTTCCAGAGGTTGTCGCCAAACACCATGGTGACCCCCCACAAGAAGAGCATGCTGGGAAATGGG
AACTACGATGTGAACGTCATTATGGCAGCACTTCAGACCAAAGGCTATGAAGCTGTTTGGTGGGACAAGCGCAGGGATGT
TGGCGCCATTGCTCTCACAAACGTTATGGGCTTCATCATGAACCTGCCGTCCAGCCTGTGCTGGGGTCCCCTGAAGCTGC
CACTCAAAAGGCAGCACTGGATCTGTGTTCGAGAGGTGGGAGGTGCCTACTACAACCTGGACTCCAAACTGAAGATGCCC
GAATGGATTGGAGGCAAGAGCGAGCTCAGGAAGTTTCTAAAACATCATTTGCGAGGAAAGAACTGTGAACTCCTGCTGGT
GGTACCAGAAGAGGTGGAGGCCCATCAGAGCTGGAGGGCTGACGTGTGA

Library Parental gene expression (RPM)
SRP017611_brain 24 .35 RPM
SRP017611_kidney 26 .79 RPM
SRP017611_liver 13 .36 RPM
ERP005899_muscle 25 .34 RPM
ERP005899_liver 10 .89 RPM
SRP030211_testis 38 .00 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000001379 ortholog_one2one 1 retrogene
retro_cfam_1500,
Choloepus hoffmanni ENSCHOG00000001723 ortholog_one2one 2 retrogenes
retro_chof_1576, retro_chof_233,
Equus caballus ENSECAG00000015546 ortholog_one2one 1 retrogene
retro_ecab_251,
Felis catus ENSFCAG00000002821 ortholog_one2one 1 retrogene
retro_fcat_565,
Macropus eugenii ENSMEUG00000002899 ortholog_one2one 2 retrogenes
retro_meug_1507, retro_meug_531,
Microcebus murinus ENSMICG00000011798 ortholog_one2one 1 retrogene
retro_mmur_1202,
Myotis lucifugus ENSMLUG00000003764 ortholog_one2one 1 retrogene
retro_mluc_1868,
Mus musculus ENSMUSG00000022426 ortholog_one2one 1 retrogene
retro_mmus_3014,
Otolemur garnettii ENSOGAG00000007520 ortholog_one2one 3 retrogenes
retro_ogar_1462, retro_ogar_2911, retro_ogar_3487,
Pteropus vampyrus ENSPVAG00000010148 ortholog_one2one 1 retrogene
retro_pvam_181,
Rattus norvegicus ENSRNOG00000014440 ortholog_one2one 2 retrogenes
retro_rnor_2954, retro_rnor_906,
Sarcophilus harrisii ENSSHAG00000015931 ortholog_one2one 1 retrogene
retro_shar_643,
Ictidomys tridecemlineatus ENSSTOG00000024999 ortholog_one2many 1 retrogene
retro_itri_193,
Tarsius syrichta ENSTSYG00000008846 ortholog_one2one 1 retrogene
retro_tsyr_1076,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_1508 95.87 59.90
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Download FASTA sequences of all ENSBTAG00000010171 retrocopies