Parental gene:

Josd1, ENSRNOG00000014440

Aliases:Josd1, RGD1305388
Description:Josephin-1 [Source:UniProtKB/Swiss-Prot;Acc:Q5BJY4]
Organism:Rat (Rattus norvegicus)
Coordinates:7:120895715..120910124(-)


>ENSRNOG00000014440
ATGAGTTGCATGCCATGGAAAGGAGACAAGGCCAAATCTGAATCCTTGGAGCTTCCCCAGGCAGCACCCCCACAAATCTA
CCATGAGAAGCAGCGCAGGGAGCTCTGTGCCCTTCATGCTCTCAACAACGTCTTCCAGGACAGCAACGCCTTCACGCGGG
AAACGCTGCAGGAGATTTTCCAGAGGCTGTCTCCGAACACTGTGGTGACGCCCCACAAGAAGAGCATGCTGGGAAATGGG
AATTATGATGTGAATGTCATCATGGCGGCCCTTCAAACAAAAGGATATGAAGCTGTTTGGTGGGACAAGCGCAGGGACGT
GGGTGTTATTGCTCTTGCTAACGTCATGGGCTTCATCATGAACCTGCCCTCCAGCCTGTGCTGGGGTCCACTCAAGTTGC
CTCTCAAAAGGCAGCACTGGATCTGTGTTCGTGAGGTGGGAGGGGCCTACTACAACCTTGACTCCAAACTCAAGATGCCA
GAGTGGATTGGAGGCGAGAGTGAGCTCAGGAAATTTCTAAAATACCATTTGCGAGGTAAAAACTGTGAACTCCTACTGGT
GGTACCAGAAGAAGTGGAAGCCCATCAGAGCTGGAGGGCCGACGTGTGA

Library Parental gene expression (RPM)
SRP017611_liver 23 .40 RPM
SRP017611_kidney 26 .52 RPM
SRP017611_brain 52 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000010171 ortholog_one2one 1 retrogene
retro_btau_1508,
Canis familiaris ENSCAFG00000001379 ortholog_one2one 1 retrogene
retro_cfam_1500,
Choloepus hoffmanni ENSCHOG00000001723 ortholog_one2one 2 retrogenes
retro_chof_1576, retro_chof_233,
Equus caballus ENSECAG00000015546 ortholog_one2one 1 retrogene
retro_ecab_251,
Felis catus ENSFCAG00000002821 ortholog_one2one 1 retrogene
retro_fcat_565,
Macropus eugenii ENSMEUG00000002899 ortholog_one2one 2 retrogenes
retro_meug_1507, retro_meug_531,
Microcebus murinus ENSMICG00000011798 ortholog_one2one 1 retrogene
retro_mmur_1202,
Myotis lucifugus ENSMLUG00000003764 ortholog_one2one 1 retrogene
retro_mluc_1868,
Mus musculus ENSMUSG00000022426 ortholog_one2one 1 retrogene
retro_mmus_3014,
Otolemur garnettii ENSOGAG00000007520 ortholog_one2one 3 retrogenes
retro_ogar_1462, retro_ogar_2911, retro_ogar_3487,
Pteropus vampyrus ENSPVAG00000010148 ortholog_one2one 1 retrogene
retro_pvam_181,
Rattus norvegicus ENSRNOG00000019442 within_species_paralog 1 retrogene
retro_rnor_550,
Sarcophilus harrisii ENSSHAG00000015931 ortholog_one2one 1 retrogene
retro_shar_643,
Ictidomys tridecemlineatus ENSSTOG00000024999 ortholog_one2many 1 retrogene
retro_itri_193,
Tarsius syrichta ENSTSYG00000008846 ortholog_one2one 1 retrogene
retro_tsyr_1076,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_rnor_906 70.54 62.87
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2. retro_rnor_2954 95.77 70.30
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Download FASTA sequences of all ENSRNOG00000014440 retrocopies