Parental gene:

JOSD1, ENSECAG00000015546

Aliases:None
Description:Josephin domain containing 1 [Source:HGNC Symbol;Acc:28953]
Organism:Horse (Equus caballus)
Coordinates:28:35698832..35708450(-)


>ENSECAG00000015546
ATGAGTTGCGTGCCATGGAAAGGAGACAAGGCCAAATCTGAATCCTTGGAGCTGCCCCAGGCGGCACCCCCCCGAATCTA
CCATGAGAAACAGCGCAGGGAGCTTTGTGCCCTGCATGCCCTCAATAACGTCTTCCAGGACGGCAATGCCTTCACCCGGG
AAACGCTGCAGGAGATTTTCCAGAGGTTGTCTCCAAACACCATGGTGACCCCCCACAAGAAGAGCATGCTGGGAAATGGG
AACTACGACGTAAACGTCATTATGGCAGCACTTCAAACCAAAGGCTATGAAGCTGTTTGGTGGGACAAACGCAGGGATGT
CAGTGCCATTGCTCTCACTAACGTTATGGGCTTCATCATGAATCTGCCCTCCAGCCTGTGCTGGGGTCCTCTGAAGTTGC
CTCTCAAAAGGCAGCACTGGATCTGTGTTCGAGAGGTGGGAGGTGCCTACTACAACCTCGACTCCAAACTGAAGATGCCC
GAGTGGATTGGAGGCGAGAGCGAGCTCAGGAAATTTCTAAAACATCATTTGCGAGGAAAGAACTGTGAACTCCTCCTGGT
GGTAACAGAAGAGGTGGAGGCCCATCAGAGTTGGAGGACTGACGTGTAA

Library Parental gene expression (RPM)
SRP021940_synovial_membrane 30 .64 RPM
SRP021940_embryo 18 .59 RPM
SRP021940_cerebellum 21 .86 RPM
SRP021940_testis 19 .37 RPM
SRP021940_placental_villous 30 .45 RPM
SRP021940_articular_cartilage 13 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000010171 ortholog_one2one 1 retrogene
retro_btau_1508,
Canis familiaris ENSCAFG00000001379 ortholog_one2one 1 retrogene
retro_cfam_1500,
Choloepus hoffmanni ENSCHOG00000001723 ortholog_one2one 2 retrogenes
retro_chof_1576, retro_chof_233,
Felis catus ENSFCAG00000002821 ortholog_one2one 1 retrogene
retro_fcat_565,
Macropus eugenii ENSMEUG00000002899 ortholog_one2one 2 retrogenes
retro_meug_1507, retro_meug_531,
Microcebus murinus ENSMICG00000011798 ortholog_one2one 1 retrogene
retro_mmur_1202,
Myotis lucifugus ENSMLUG00000003764 ortholog_one2one 1 retrogene
retro_mluc_1868,
Mus musculus ENSMUSG00000022426 ortholog_one2one 1 retrogene
retro_mmus_3014,
Otolemur garnettii ENSOGAG00000007520 ortholog_one2one 3 retrogenes
retro_ogar_1462, retro_ogar_2911, retro_ogar_3487,
Pteropus vampyrus ENSPVAG00000010148 ortholog_one2one 1 retrogene
retro_pvam_181,
Rattus norvegicus ENSRNOG00000014440 ortholog_one2one 2 retrogenes
retro_rnor_2954, retro_rnor_906,
Sarcophilus harrisii ENSSHAG00000015931 ortholog_one2one 1 retrogene
retro_shar_643,
Ictidomys tridecemlineatus ENSSTOG00000024999 ortholog_one2many 1 retrogene
retro_itri_193,
Tarsius syrichta ENSTSYG00000008846 ortholog_one2one 1 retrogene
retro_tsyr_1076,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ecab_251 77.94 100.00
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Download FASTA sequences of all ENSECAG00000015546 retrocopies