Parental gene:

GALNT1, ENSBTAG00000011206

Aliases:None
Description:Polypeptide N-acetylgalactosaminyltransferase 1 Polypeptide N-acetylgalactosaminyltransferase 1 soluble form [Source:UniProtKB/Swiss-Prot;Acc:Q07537]
Organism:Cow (Bos taurus)
Coordinates:24:21687845..21756844(-)


>ENSBTAG00000011206
ATGAGAAAATTTGCATACTGCAAGGTGGTCCTAGCCACCTCCTTGATTTGGGTACTCTTGGATATGTTCCTGCTGCTTTA
CTTCAGTGAATGCAACAAATGTGATGAAAAAAAAGAGAGAGGACTTCCTGCTGGGGATGTTCTAGAGCCAGTACAAAAGC
CTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCTAAAGAGGATCAAGAAAAGATGAAAGAGATGTTTAAA
ATCAATCAGTTCAATTTAATGGCAAGTGAGATGATTGCACTCAACAGATCTCTACCAGATGTTAGATTAGAAGGGTGTAA
AACAAAGGTGTATCCAGATAACCTTCCTACAACCAGTGTGGTGATTGTTTTCCACAATGAGGCTTGGAGCACACTTCTGC
GAACTGTCCATAGCGTCATTAATCGCTCACCAAGGCACATGCTAGAAGAAATTGTTCTAGTAGATGATGCCAGTGAAAGA
GACTTTTTAAAAAGACCTCTAGAGAGTTACGTGAAAAAATTAAAAGTACCCGTTCACGTCATTCGAATGGAGCAGCGTTC
TGGATTGATCAGAGCTAGGTTAAAAGGTGCTGCTGTGTCTAAAGGCCAAGTGATCACCTTTTTAGACGCGCACTGTGAGT
GCACAGTGGGGTGGCTGGAGCCTCTCTTAGCCAGGATCAAACATGACAGGAAGACAGTGGTCTGTCCCATCATAGATGTG
ATCAGTGATGACACTTTCGAGTACATGGCAGGTTCTGACATGACCTATGGCGGGTTCAACTGGAAGCTCAACTTTCGCTG
GTATCCTGTTCCCCAAAGAGAAATGGACAGAAGGAAAGGTGATCGGACTCTTCCTGTGAGAACACCTACAATGGCAGGAG
GCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATATGATGCTGGAATGGATATTTGGGGAGGAGAAAAC
CTAGAAATTTCCTTTAGGATTTGGCAGTGTGGAGGAACTTTGGAGATTGTTACTTGCTCACATGTTGGACATGTGTTTCG
GAAAGCTACACCCTACACGTTTCCAGGAGGCACGGGGCAGATTATCAATAAAAATAACAGACGACTTGCAGAAGTATGGA
TGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGGTGTTACAAAGGTAGATTATGGAGATATATCATCAAGACTT
GGTCTAAGGCACAAACTCCAATGCAGACCATTCTCTTGGTACCTAGAGAATATTTATCCTGATTCTCAGATTCCACGTCA
CTATTTCTCTTTGGGAGAGATACGAAATGTGGAAACAAATCAGTGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAAG
TTGGAATTTTTAACTGTCATGGTATGGGAGGTAATCAGGTTTTCTCTTACACTGCCAACAAAGAAATTAGAACAGATGAC
CTTTGCTTGGATGTCTCCAAACTTAATGGCCCAGTCACAATGCTCAAATGCCACCACCTAAAAGGCAACCAGCTTTGGGA
GTATGACCCGGTGAAGTTGACCCTGCAGCATGTGAACAGTAACCAGTGCCTGGACAAAGCCACAGACGAGGACAGCCAGG
TGCCCAGCATCAGAGACTGCAGCGGAAGCCGATCCCAGCAGTGGCTTCTTCGGAACGTCACCCTTCCAGAAATATTCTGA

Library Parental gene expression (RPM)
SRP017611_brain 17 .45 RPM
SRP017611_kidney 23 .53 RPM
SRP017611_liver 20 .84 RPM
ERP005899_muscle 48 .35 RPM
ERP005899_liver 13 .27 RPM
SRP030211_testis 12 .91 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000009037 other_paralog 1 retrogene
retro_btau_1410,
Callithrix jacchus ENSCJAG00000021030 ortholog_one2one 2 retrogenes
retro_cjac_1554, retro_cjac_865,
Myotis lucifugus ENSMLUG00000001978 ortholog_one2many 1 retrogene
retro_mluc_163,
Mus musculus ENSMUSG00000000420 ortholog_one2one 1 retrogene
retro_mmus_1312,
Ictidomys tridecemlineatus ENSSTOG00000003311 ortholog_one2one 1 retrogene
retro_itri_954,
Tarsius syrichta ENSTSYG00000014610 ortholog_one2one 1 retrogene
retro_tsyr_1444,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_581 97.67 100.00
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Download FASTA sequences of all ENSBTAG00000011206 retrocopies