>retro_btau_581
ATGAGAAAATTTGCATACTGCAAGGTGGTCCTAGCCACCTCCTTGATTTGGGTACTCTTGGATATGTTCCTGCTGCTTTA
CTTCAGTGAATGCAACAAATGTGATGAAAAAAAAGAGAGAGGACTTCCTGCTGGGGATGTTCTAGAGCCAGTACAAAAGC
CTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCTAAACAGGATCAAGAAAAGATGAAAGACATGTTTAAA
ATCAATCAGTTCAATTTAATGGCAAGTGAGATGATTGCACTCAACAGATCTCTACCAGATGTTAGGTTAGAAGGGTGTAA
AACAAAGGTGTATCCAAATAACCTTCCTACAACCAGTGTGGTGATTGTTTTCCACAATGAGGCTTGGAGCACACTTCTGC
GAACTGTCCATAGCATCATTAATCACTCACCAAGGCACATGCTAGAAGAAATTGTTCTAGTAGATGATGCCAGTGAAAGA
GACTTTTTAAAAAGACCTCTAGAGAGTTAAGTGAAAAAATTAAAAGTACCCGTTCACGTCATTCGAATGGAGCAGCGTTC
TGGATTGATCAGAGCTAGGTTAAAAGGTGCTGCTGTGTCTAAAGGCCAAGTGACCACCTTTTTAGATGCGCACTGTGAGT
GCACAGTGGGGTGGCTGGAGCCTCTCTTAGCCAGGATCAAACACGACAGGAAGACAGTGGTCTGTCCCATCATAGATGTG
ATCAGTGATGACACTTTCGAGTACATGGCAGGTTCTGACATGACCTATGGTGGGTTCAACTGGAAGCTCAACTTTCGCTG
GTATCCTGTTCCCCAAAGAGAAATGGACAGAAGGAAAGGTGATCGGACTCTTCCTGTGAGAACACCTACAATGGCAGGAG
GCCTTTTCTCAATAGACAGAGATTACTTTCAGGAAACTGGAACATATGATGCTGGAATGGATATTTGGGGAGGAGAAAAC
CTAGAAATTTCCTTTAGGATTTGGCAGTGTGGAGGAACTTTGGAGATTGTTACTTGCTCACATGTTGGACATGTGTTTCG
GAAAGCTACACCCTACACGTTTCCAGGAGGCACGGGGCAGATTATCAATAAAAATAACAGACGACTTGCAGAAGTATGGA
TGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGGTGTTACAAAGGTAGATTATGGAGATATATCATCAAGACTT
GGTCTAAGGCACAAACTCCAATGCAGACCATTCTCTTGGTACCTAGAGAATATTTATCCTGATTCTCAGATTCCACGTCA
CTATTTCTCTTTGGGAGAGATACGAAATGTGGAAACAAATCAGTGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAAG
TTGGAATTTTTAACTGTCATGGTATGGGAGGTAATCAGGTTTTCTCTTACACTGCCAACAAAGAAATTAGTACAGATGAC
CTTTGCTTGGATGTCTCCAAACTTAATGGCCCAGTCACAATGCTCAAATGCCACCACCTAAAAGGCAACCAGCTTTGGGA
CTATGACCCGGTGAAATTGACCCTGCAGCATGTGAACAGTAACCAGTGCCTGGACAAAGCCACAGACGAGGACAGCCAGG
TGCCCAGCATCAGAGACTGCAGCGGAAGCCGATCCCAGCAGTGGCTTCTTCGGAACGTCACCCTTCCAGAAATATTC
ORF - retro_btau_581 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.67 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | MRKFAYCKVVLATSLIWVLLDMFLLLYFSECNKCDEKKERGLPAGDVLEPVQKPHEGPGEMGKPVVIPKE |
| MRKFAYCKVVLATSLIWVLLDMFLLLYFSECNKCD...ERGLPAGDVLEPVQKPHEGPGEMGKPVVIPK. |
Retrocopy | MRKFAYCKVVLATSLIWVLLDMFLLLYFSECNKCDXXXERGLPAGDVLEPVQKPHEGPGEMGKPVVIPKQ |
|
Parental | DQEKMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVI |
| DQEKMK.MFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYP.NLPTTSVVIVFHNEAWSTLLRTVHS.I |
Retrocopy | DQEKMKDMFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYPNNLPTTSVVIVFHNEAWSTLLRTVHSII |
|
Parental | NRSPRHMLEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDA |
| N.SPRHMLEEIVLVDDASERDFLKRPLES.VKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQV.TFLDA |
Retrocopy | NHSPRHMLEEIVLVDDASERDFLKRPLES*VKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVTTFLDA |
|
Parental | HCECTVGWLEPLLARIKHDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKG |
| HCECTVGWLEPLLARIKHDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKG |
Retrocopy | HCECTVGWLEPLLARIKHDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKG |
|
Parental | DRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT |
| DRTLPVRTPTMAGGLFSIDRDYFQE.GTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT |
Retrocopy | DRTLPVRTPTMAGGLFSIDRDYFQETGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT |
|
Parental | PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRHKLQCRPFSWYLENIYP |
| PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRHKLQCRPFSWYLENIYP |
Retrocopy | PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRHKLQCRPFSWYLENIYP |
|
Parental | DSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLNG |
| DSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEI.TDDLCLDVSKLNG |
Retrocopy | DSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEISTDDLCLDVSKLNG |
|
Parental | PVTMLKCHHLKGNQLWEYDPVKLTLQHVNSNQCLDKATDEDSQVPSIRDCSGSRSQQWLLRNVTLPEIF |
| PVTMLKCHHLKGNQLW.YDPVKLTLQHVNSNQCLDKATDEDSQVPSIRDCSGSRSQQWLLRNVTLPEIF |
Retrocopy | PVTMLKCHHLKGNQLWDYDPVKLTLQHVNSNQCLDKATDEDSQVPSIRDCSGSRSQQWLLRNVTLPEIF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
ERP005899_liver |
0 .29 RPM |
13 .27 RPM |
ERP005899_muscle |
0 .58 RPM |
48 .35 RPM |
SRP017611_brain |
1 .23 RPM |
17 .45 RPM |
SRP017611_kidney |
1 .01 RPM |
23 .53 RPM |
SRP017611_liver |
0 .91 RPM |
20 .84 RPM |
SRP030211_testis |
0 .10 RPM |
12 .91 RPM |
Bos taurus was not studied using ChIP-Seq data.
1 EST(s) were mapped to retro_btau_581 retrocopy
EST ID |
Start |
End |
Identity |
Match |
Mis-match |
Score |
DY148615 |
48308663 |
48308906 |
100 |
243 |
0 |
243 |
Bos taurus was not studied using FANTOM5 data.
retro_btau_581 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_btau_581 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
7 parental genes, and
8 retrocopies.