Parental gene: | Galnt1, ENSMUSG00000000420 |
| Aliases: | None |
| Description: | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1 [Source:MGI Symbol;Acc:MGI:894693] |
| Organism: | Mouse (Mus musculus) |
| Coordinates: | 18:24205343..24286818(+) |
>ENSMUSG00000000420
ATGAGAAAATTTGCATATTGCAAGGTGGTTCTAGCCACCTCCTTGGTTTGGGTACTCTTGGATATGTTCCTGCTGCTTTA
CTTCAGTGAATGCAACAAATGTGAAGAGAAGCAGGAGAGAGGACTTCCTGCTGGTGACGTTCTAGAGCTAGTGCAGAAAC
CTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCGAAAGAGGATCAAGAAAAGATGAAAGAGATGTTTAAA
ATCAATCAGTTCAACTTAATGGCAAGTGAGATGATTGCACTCAACAGATCCTTACCAGATGTGAGGTTAGAGGGGTGTAA
AACAAAGGTGTATCCAGATAACCTTCCTACAACAAGTGTGGTGATTGTTTTCCACAATGAGGCATGGAGCACACTTCTGC
GAACAGTCCATAGTGTCATTAATCGCTCGCCAAGACATATGATAGAAGAGATTGTTCTTGTAGATGATGCCAGTGAAAGA
GACTTTTTGAAAAGACCTCTAGAGAGTTATGTGAAAAAACTGAAAGTGCCGGTTCATGTAATTCGAATGGAGCAGCGCTC
TGGGTTGATCAGAGCTAGATTGAAAGGAGCTGCTGTGTCCAGAGGCCAAGTGATCACCTTCTTAGATGCTCACTGTGAAT
GCACCGCAGGGTGGCTGGAGCCTCTGTTGGCCCGGATCAAACATGACAGGAGGACAGTGGTGTGTCCTATCATCGACGTG
ATCAGTGATGACACTTTCGAGTACATGGCGGGCTCTGACATGACCTATGGTGGCTTCAACTGGAAGCTCAATTTTCGTTG
GTATCCTGTTCCCCAGCGAGAAATGGACAGAAGGAAAGGTGACAGGACTCTTCCTGTCAGAACACCTACAATGGCTGGAG
GCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATACGATGCTGGAATGGATATTTGGGGAGGAGAAAAC
CTAGAAATTTCATTTAGGATTTGGCAGTGTGGAGGAACTTTGGAAATAGTGACATGCTCCCATGTTGGTCATGTGTTTCG
GAAAGCTACACCTTACACATTTCCAGGAGGGACAGGGCAGATTATCAATAAGAATAACAGGCGGCTTGCAGAAGTATGGA
TGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGGTGTTACAAAGGTAGATTATGGAGATATATCATCAAGACTT
GGCCTAAGACGTAAACTACAATGCAAACCTTTCTCTTGGTACCTAGAAAATATTTACCCTGATTCTCAAATTCCTCGTCA
CTATTTCTCATTGGGAGAGATACGAAATGTGGAAACAAATCAGTGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAGG
TTGGAATCTTTAATTGTCATGGTATGGGAGGTAATCAGGTTTTCTCCTACACTGCCAACAAAGAAATTAGAACAGACGAC
CTTTGTTTGGACGTTTCCAAACTTAATGGCCCAGTCACCATGCTCAAATGCCACCACCTAAAAGGCAACCAGCTCTGGGA
GTATGACCCAGTGAAATTAACCCTGCAGCATGTGAACAGCAATCAGTGCCTGGATAAAGCCACAGAGGAGGACAGCCAGG
TGCCCAGCATTAGAGACTGCACTGGAAGCCGGTCCCAGCAGTGGCTTCTTCGAAACGTCACCCTTCCAGAAATATTCTGA
ATGAGAAAATTTGCATATTGCAAGGTGGTTCTAGCCACCTCCTTGGTTTGGGTACTCTTGGATATGTTCCTGCTGCTTTA
CTTCAGTGAATGCAACAAATGTGAAGAGAAGCAGGAGAGAGGACTTCCTGCTGGTGACGTTCTAGAGCTAGTGCAGAAAC
CTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCGAAAGAGGATCAAGAAAAGATGAAAGAGATGTTTAAA
ATCAATCAGTTCAACTTAATGGCAAGTGAGATGATTGCACTCAACAGATCCTTACCAGATGTGAGGTTAGAGGGGTGTAA
AACAAAGGTGTATCCAGATAACCTTCCTACAACAAGTGTGGTGATTGTTTTCCACAATGAGGCATGGAGCACACTTCTGC
GAACAGTCCATAGTGTCATTAATCGCTCGCCAAGACATATGATAGAAGAGATTGTTCTTGTAGATGATGCCAGTGAAAGA
GACTTTTTGAAAAGACCTCTAGAGAGTTATGTGAAAAAACTGAAAGTGCCGGTTCATGTAATTCGAATGGAGCAGCGCTC
TGGGTTGATCAGAGCTAGATTGAAAGGAGCTGCTGTGTCCAGAGGCCAAGTGATCACCTTCTTAGATGCTCACTGTGAAT
GCACCGCAGGGTGGCTGGAGCCTCTGTTGGCCCGGATCAAACATGACAGGAGGACAGTGGTGTGTCCTATCATCGACGTG
ATCAGTGATGACACTTTCGAGTACATGGCGGGCTCTGACATGACCTATGGTGGCTTCAACTGGAAGCTCAATTTTCGTTG
GTATCCTGTTCCCCAGCGAGAAATGGACAGAAGGAAAGGTGACAGGACTCTTCCTGTCAGAACACCTACAATGGCTGGAG
GCCTTTTTTCAATAGACAGAGATTACTTTCAGGAAATTGGAACATACGATGCTGGAATGGATATTTGGGGAGGAGAAAAC
CTAGAAATTTCATTTAGGATTTGGCAGTGTGGAGGAACTTTGGAAATAGTGACATGCTCCCATGTTGGTCATGTGTTTCG
GAAAGCTACACCTTACACATTTCCAGGAGGGACAGGGCAGATTATCAATAAGAATAACAGGCGGCTTGCAGAAGTATGGA
TGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGGTGTTACAAAGGTAGATTATGGAGATATATCATCAAGACTT
GGCCTAAGACGTAAACTACAATGCAAACCTTTCTCTTGGTACCTAGAAAATATTTACCCTGATTCTCAAATTCCTCGTCA
CTATTTCTCATTGGGAGAGATACGAAATGTGGAAACAAATCAGTGTCTAGATAACATGGCTAGAAAAGAGAATGAAAAGG
TTGGAATCTTTAATTGTCATGGTATGGGAGGTAATCAGGTTTTCTCCTACACTGCCAACAAAGAAATTAGAACAGACGAC
CTTTGTTTGGACGTTTCCAAACTTAATGGCCCAGTCACCATGCTCAAATGCCACCACCTAAAAGGCAACCAGCTCTGGGA
GTATGACCCAGTGAAATTAACCCTGCAGCATGTGAACAGCAATCAGTGCCTGGATAAAGCCACAGAGGAGGACAGCCAGG
TGCCCAGCATTAGAGACTGCACTGGAAGCCGGTCCCAGCAGTGGCTTCTTCGAAACGTCACCCTTCCAGAAATATTCTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain | 42 .54 RPM |
| SRP007412_cerebellum | 45 .72 RPM |
| SRP007412_heart | 74 .43 RPM |
| SRP007412_kidney | 111 .55 RPM |
| SRP007412_liver | 41 .40 RPM |
| SRP007412_testis | 24 .52 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000011206 | ortholog_one2one | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000021030 | ortholog_one2one | 2 retrogenes | |
| Myotis lucifugus | ENSMLUG00000001978 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000039774 | other_paralog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000003311 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000014610 | ortholog_one2one | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmus_1312 | 76.37 | 61.36 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMUSG00000000420 retrocopies