RetrogeneDB ID: retro_mluc_163

Retrocopy location

• Organism: Microbat (Myotis lucifugus)
• Coordinates: GL429808:1540108..1541788(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMLUG00000025327
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSMLUG00000001978
• Aliases: None
• Description: None

Sequence

>retro_mluc_163
ATGAGAAAATTTGCATATTGCAAGGTGGTCCTAGCCACCTCCTTGATTTGGGTACTCTTGGATATGTTCCTGCTGCTTTA
CTTCAGTGAATGCAACAAATGTGATGGAAAAAAGGAGAGAGGACTTCCTGCTGGGGATGTTTTAGAGCCAGTACAAAAGC
CTCATGAAGGTCCTGGAGAAATGGGGAAACCAGTCGTCATTCCTAAAGAGGATCAAGGAAAGATGAAAGAGATGTTTAAA
ATCAATCAGTTCAACTTAATGGCAAGCGAGATGATTGCACTCAACAGGTCTTTACCTGATGTTAGGCTAGAAGGGTGTAA
AACAAAGGTGTATCCAGATAATCTTCCTACAACAAGTGTGGTGATTGTTTTCCACAATGAGGCCTGGAGCACACTTCTGC
GAACTGTCCATAGTGTCATAAATCGCTCACCAAGACACATGCTAGAAGAAATTGTTCTAGTAGATGATGCCAGTGAAAGA
GACTTTTTGAAAAGACCTCTGGAGAGTTATGTGAAAAAATTAAAAGTACCAGTTCATGTAATTCGAATGGAACAACGTTC
TGGATTGATCAGGGCCAGGTTAAAAGGAGCCGCTGTGTCCAAAGGCCAAGTGATCACATTCTTAGATGCTCACTGTGAGT
GCACAGTCGGGTGGCTGGAGCCTCTCTTAGCCAGGATCCAACAGGACAGGAAAACAGTGGTGTGTCCCATCATCGATGTG
ATCAGTGATGATACTTTTGAGTACATGGCGGGTTCTGATATGACCTATGGGGGATTCAATTGGAAGCTCAATTTTCGCTG
GTACCCTGTTCCCCAAAGAGAAATGGACAGAAGGAAAGGTGACCGGACTCTTCCTGTCAGAACGCCTACCATGGCCGGAG
GCCTGTTTTCAATAGACAGAGATTACTTTCAGGAGATTGGAACATACGATGCTGGAATGGATATCTGGGGAGGAGAAAAC
CTAGAAATTTCCTTTAGGATTTGGCAATGTGGAGGCACCCTGGAGATCGTTACTTGCTCACATGTTGGACACGTGTTTCG
GAAAGCTACACCTTACACGTTTCCGGGAGGCACAGGACAGATTATCAACAAAAATAACAGACGCCTCGCAGAAGTGTGGA
TGGATGAATTCAAGAATTTCTTCTATATAATTTCTCCAGGTGTTACAAAGGTAGATTATGGAGATATAGCATCGAGACTT
GGTCTAAGACACAAACTCCAATGCAAACCTTTCTCTTGGTACCTAGAGAATATTTATCCTGATTCGCAGATTCCACGTCA
CTATTTCTCTTTGGGAGAGATACGCAATGTAGAAACAAATCAGTGTCTCGATAACATGGCTAGAAAAGAGAATGAAAAAG
TTGGAATCTTTAACTGTCACGGTATGGGAGGTAATCAGGTTTTCTCTTACACTGCCAACAAAGAAATTAGGACGGATGAC
CTTTGCTTGGATGTCTCCAAACTCAACGGCCCAGTCACAATGCTCAAATGCCACCACCTAAAAGGCAACCAACTTTGGGA
GTATGATCCCGTGAAATTGACCCTGCAGCATGTGAACAGTAACCAGTGCCTGGATAAAGCCACGGAGGAGGACAGCCAGG
TGCCCAGCGTCAGAGACTGCAACGGAGGTCGGTCCCAGCAGTGGCTTCTCCACAACGTCACCCTTCCAGAGATATTCTGA

Alignment

ORF - retro_mluc_163 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.57 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MRKFAYCKVVLATSLVWVLLDMFLLLYFSECNKCDEKKERGLPAGDVLEPVQKPHEGPGEMGKPVVIPKE
          MRKFAYCKVVLATSL.WVLLDMFLLLYFSECNKCD.KKERGLPAGDVLEPVQKPHEGPGEMGKPVVIPKE
Retrocopy MRKFAYCKVVLATSLIWVLLDMFLLLYFSECNKCDGKKERGLPAGDVLEPVQKPHEGPGEMGKPVVIPKE

Parental  DQEKMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVI
          DQ.KMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVI
Retrocopy DQGKMKEMFKINQFNLMASEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVI

Parental  NRSPRHMLEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDA
          NRSPRHMLEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDA
Retrocopy NRSPRHMLEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRSGLIRARLKGAAVSKGQVITFLDA

Parental  HCECTVGWLEPLLARIKQDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKG
          HCECTVGWLEPLLARI.QDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKG
Retrocopy HCECTVGWLEPLLARIQQDRKTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKG

Parental  DRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT
          DRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT
Retrocopy DRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVTCSHVGHVFRKAT

Parental  PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPAGVTKVDYGDIASRLGLRHKLQCKPFSWYLENIY
          PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISP.GVTKVDYGDIASRLGLRHKLQCKPFSWYLENIY
Retrocopy PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISP-GVTKVDYGDIASRLGLRHKLQCKPFSWYLENIY

Parental  PDSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLN
          PDSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLN
Retrocopy PDSQIPRHYFSLGEIRNVETNQCLDNMARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDDLCLDVSKLN

Parental  GPVTMLKCHHLKGNQLWEYDPVKLTLQHVNSNQCLDKATEEDSQVPSIRDCSGGRSQQWLLRNVTLPEIF
          GPVTMLKCHHLKGNQLWEYDPVKLTLQHVNSNQCLDKATEEDSQVPS.RDC.GGRSQQWLL.NVTLPEIF
Retrocopy GPVTMLKCHHLKGNQLWEYDPVKLTLQHVNSNQCLDKATEEDSQVPSVRDCNGGRSQQWLLHNVTLPEIF

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Myotis lucifugus was not studied using RNA-Seq expression data.

ChIP-Seq

Myotis lucifugus was not studied using ChIP-Seq data.

EST

Myotis lucifugus was not studied using EST data.

TSS

Myotis lucifugus was not studied using FANTOM5 data.

Lab

retro_mluc_163 was not experimentally validated.

Homology

Retrocopy orthology:

Myotis lucifugus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000011206	1 retrocopy	retro_btau_581,
Callithrix jacchus	ENSCJAG00000021030	2 retrocopies	retro_cjac_1554, retro_cjac_865,
Myotis lucifugus	ENSMLUG00000001978	1 retrocopy	retro_mluc_163 ,
Myotis lucifugus	ENSMLUG00000002630	1 retrocopy	retro_mluc_804,
Mus musculus	ENSMUSG00000000420	1 retrocopy	retro_mmus_1312,
Ictidomys tridecemlineatus	ENSSTOG00000003311	1 retrocopy	retro_itri_954,
Tarsius syrichta	ENSTSYG00000014610	1 retrocopy	retro_tsyr_1444,