Parental gene:

RPS19, ENSBTAG00000011963

Aliases:None
Description:40S ribosomal protein S19 [Source:UniProtKB/Swiss-Prot;Acc:Q32PD5]
Organism:Cow (Bos taurus)
Coordinates:18:51689626..51697161(-)


>ENSBTAG00000011963
ATGCCTGGAGTTACTGTAAAAGATGTCAACCAGCAGGAGTTCGTCAGAGCTCTGGCAGCCTTCCTCAAAAAGTCCGGGAA
GCTGAAAGTCCCTGAATGGGTGGACACCGTCAAGCTGGCCAAGCATAAAGAACTTGCTCCCTACGATGAGAACTGGTTCT
ACACACGAGCTGCTTCCACGGCACGGCACCTGTACCTCCGGGGTGGCGCTGGGGTTGGCTCCATGACCAAGATCTATGGG
GGGCGCCAGAGGAACGGCGTCATGCCCAGCCACTTCAGCAGAGGCTCCAAGAGCGTGGCCCGGCGGGTCCTCCAAGCCCT
GGAGGGGCTGAAAATGGTGGAAAAGGACCAAGATGGGGGCCGCAAACTGACGCCTCAGGGACAGAGAGATCTGGACAGAA
TCGCTGGACAGGTGGCAGCTGCCAACAAGAAGCATTAG

Library Parental gene expression (RPM)
ERP005899_liver 34 .75 RPM
ERP005899_muscle 852 .02 RPM
SRP017611_brain 79 .48 RPM
SRP017611_kidney 148 .24 RPM
SRP017611_liver 103 .98 RPM
SRP030211_testis 105 .08 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000028485 possible_ortholog 10 retrogenes
retro_cfam_1017, retro_cfam_1074, retro_cfam_1155, retro_cfam_1251, retro_cfam_1377, retro_cfam_149, retro_cfam_1998, retro_cfam_2212, retro_cfam_249, retro_cfam_499,
Callithrix jacchus ENSCJAG00000020243 possible_ortholog 5 retrogenes
retro_cjac_1968, retro_cjac_2004, retro_cjac_2094, retro_cjac_2324, retro_cjac_3,
Dasypus novemcinctus ENSDNOG00000002376 ortholog_one2one 4 retrogenes
retro_dnov_1084, retro_dnov_1124, retro_dnov_1838, retro_dnov_2456,
Erinaceus europaeus ENSEEUG00000013614 possible_ortholog 4 retrogenes
retro_eeur_252, retro_eeur_259, retro_eeur_318, retro_eeur_385,
Monodelphis domestica ENSMODG00000010067 ortholog_one2one 3 retrogenes
retro_mdom_1531, retro_mdom_1888, retro_mdom_883,
Rattus norvegicus ENSRNOG00000048199 possible_ortholog 3 retrogenes
retro_rnor_221, retro_rnor_299, retro_rnor_51,
Sus scrofa ENSSSCG00000003042 possible_ortholog 3 retrogenes
retro_sscr_1064, retro_sscr_308, retro_sscr_58,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_77 97.93 100.00
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2. retro_btau_722 94.96 82.07
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Download FASTA sequences of all ENSBTAG00000011963 retrocopies