Parental gene: | PDHB, ENSBTAG00000021724 |
| Aliases: | None |
| Description: | Pyruvate dehydrogenase E1 component subunit beta, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P11966] |
| Organism: | Cow (Bos taurus) |
| Coordinates: | 22:43461213..43466626(+) |
>ENSBTAG00000021724
ATGGCGGTGGTTGCTGTGTTGGTGCGGAAACCCCTTGAGCAGGTCTCCGGGCTGCTGAGGAGGCGGTTCCACCGGACCGC
GCCGGCTGCACTGCAGGTGACAGTTCGTGAGGCTATAAATCAAGGCATGGATGAGGAGCTGGAAAGAGATGAGAAGGTAT
TTCTCCTTGGGGAAGAAGTTGCCCAGTACGATGGGGCATATAAGGTTAGTCGAGGCCTGTGGAAGAAATATGGAGATAAG
AGGATCATAGATACTCCCATATCTGAGATGGGCTTTGCTGGAATTGCTGTAGGTGCCGCTATGGCTGGGTTACGGCCCAT
TTGTGAATTCATGACCTTCAATTTCTCTATGCAAGCCATCGACCAGGTCATAAACTCAGCTGCCAAGACGTACTACATGT
CAGGGGGCCTTCAGTCTGTGCCCATAGTCTTCAGGGGGCCCAATGGCGCCTCAGCAGGTGTAGCTGCCCAGCACTCACAG
TGTTTTGCTGCCTGGTATGGGCATTGCCCAGGCTTAAAGGTGGTCAGCCCCTGGAGTTCAGAGGATGCAAAAGGGCTTAT
TAAATCAGCCATTCGGGATAACAACCCAGTGGTGGTGCTGGAGAATGAATTGATGTACGGAGTACCTTTTGAACTTCCTT
CAGAAGCTCAGTCAAAAGATTTTCTGATCCCTATTGGAAAAGCCAAAATAGAAAGGCAAGGAACACACGTAACTATAGTT
GCTCATTCAAGACCTGTGGGCCACTGCTTAGAAGCTGCAACAGTACTGTCTAAAGAGGGAATTGAATGTGAGGTGATAAA
TTTGCGAACCATCAGGCCAATGGACATTGAAACAATAGAAGGCAGTGTCATGAAGACCAATCACCTTGTAACCGTGGAAG
GAGGCTGGCCACAGTTCGGAGTAGGAGCTGAAATCTGTGCCAGGATCATGGAAGGCCCCGCGTTCAATTTCCTGGATGCT
CCTGCAGTTCGCGTCACTGGTGCCGATGTGCCTATGCCTTATGCAAAGATTCTAGAAGACAACTCTGTACCTCAGGTTAA
GGACATCATATTTGCAATAAAGAAAACACTGAATATCTAG
ATGGCGGTGGTTGCTGTGTTGGTGCGGAAACCCCTTGAGCAGGTCTCCGGGCTGCTGAGGAGGCGGTTCCACCGGACCGC
GCCGGCTGCACTGCAGGTGACAGTTCGTGAGGCTATAAATCAAGGCATGGATGAGGAGCTGGAAAGAGATGAGAAGGTAT
TTCTCCTTGGGGAAGAAGTTGCCCAGTACGATGGGGCATATAAGGTTAGTCGAGGCCTGTGGAAGAAATATGGAGATAAG
AGGATCATAGATACTCCCATATCTGAGATGGGCTTTGCTGGAATTGCTGTAGGTGCCGCTATGGCTGGGTTACGGCCCAT
TTGTGAATTCATGACCTTCAATTTCTCTATGCAAGCCATCGACCAGGTCATAAACTCAGCTGCCAAGACGTACTACATGT
CAGGGGGCCTTCAGTCTGTGCCCATAGTCTTCAGGGGGCCCAATGGCGCCTCAGCAGGTGTAGCTGCCCAGCACTCACAG
TGTTTTGCTGCCTGGTATGGGCATTGCCCAGGCTTAAAGGTGGTCAGCCCCTGGAGTTCAGAGGATGCAAAAGGGCTTAT
TAAATCAGCCATTCGGGATAACAACCCAGTGGTGGTGCTGGAGAATGAATTGATGTACGGAGTACCTTTTGAACTTCCTT
CAGAAGCTCAGTCAAAAGATTTTCTGATCCCTATTGGAAAAGCCAAAATAGAAAGGCAAGGAACACACGTAACTATAGTT
GCTCATTCAAGACCTGTGGGCCACTGCTTAGAAGCTGCAACAGTACTGTCTAAAGAGGGAATTGAATGTGAGGTGATAAA
TTTGCGAACCATCAGGCCAATGGACATTGAAACAATAGAAGGCAGTGTCATGAAGACCAATCACCTTGTAACCGTGGAAG
GAGGCTGGCCACAGTTCGGAGTAGGAGCTGAAATCTGTGCCAGGATCATGGAAGGCCCCGCGTTCAATTTCCTGGATGCT
CCTGCAGTTCGCGTCACTGGTGCCGATGTGCCTATGCCTTATGCAAAGATTCTAGAAGACAACTCTGTACCTCAGGTTAA
GGACATCATATTTGCAATAAAGAAAACACTGAATATCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 41 .02 RPM |
| SRP017611_kidney | 95 .43 RPM |
| SRP017611_liver | 32 .24 RPM |
| ERP005899_muscle | 40 .54 RPM |
| ERP005899_liver | 61 .57 RPM |
| SRP030211_testis | 84 .15 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000007340 | ortholog_one2many | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000019739 | ortholog_one2one | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000006937 | ortholog_one2one | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002398 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000021748 | ortholog_one2one | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000015632 | ortholog_one2many | 1 retrogene | |
| Procavia capensis | ENSPCAG00000016595 | ortholog_one2one | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000008480 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000019553 | ortholog_one2one | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000016148 | ortholog_one2one | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_btau_596 | 70.40 | 94.99 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSBTAG00000021724 retrocopies