Parental gene:

PDHB, ENSCJAG00000019739

Aliases:None
Description:pyruvate dehydrogenase (lipoamide) beta [Source:HGNC Symbol;Acc:8808]
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:34477564..34484256(-)


>ENSCJAG00000019739
ATGGCGGCGGTGTCTGGCTTGGTTCGGAGACCCCTTCGCCAGGTCTCCGGGCTGCTGAAGAGGCGCTTTCACAGGACCGC
GCCGGCTGCGCTGCAGGTGACAGTTCGTGATGCTATAAATCAGGGCATGGATGAGGAGCTGGAAAGAGATGAGAAGGTAT
TTCTCCTTGGAGAAGAAGTTGCCCAGTATGATGGGGCATACAAGGTTAGTCGAGGGCTATGGAAGAAATATGGAGACAAG
AGGATTATTGACACTCCCATATCAGAGATGGGCTTTGCTGGAATTGCTGTAGGTGCAGCTATGGCTGGGTTGCGGCCCAT
TTGTGAATTTATGACCTTCAATTTCTCCATGCAAGCCATTGACCAGGTTATAAACTCAGCTGCCAAGACCTACTACATGT
CCGGTGGCCTTCAGTCTGTGCCTATAGTCTTCAGGGGGCCCAATGGTGCCTCAGCAGGTGTAGCTGCCCAGCACTCACAG
TGCTTTGCTGCATGGTATGGGCACTGCCCAGGCTTAAAGGTGGTCAGTCCCTGGAATTCAGAGGATGCTAAAGGACTTAT
TAAATCAGCCATTCGGGATAACAATCCAGTGGTGGTGCTAGAGAATGAATTGATGTATGGGGTTCCTTTTGAATTTCCTC
CGGAAGCGCAGTCAAAAGATTTTCTAGTTCCTATTGGAAAAGCCAAAATAGAAAGGCAAGGAACACATATAACTGTGGTT
TCCCATTCGAGACCTGTGGGCCTCATTTTGATGAAGGAATTTAAAGTGAAGGAGGATTGGCTGGGTAGTGAAGTGATAAA
TATGCGTACCATCAGACCAATGGACATGGAAACCATAGAAGCCAGTGTCATGAAGACAAATCACCTTGTAACTGTGGAAG
GAGGCTGGCCACAGTTTGGAGTAGGAGCTGAAATCTGTGCCAGGATCATGGAAGGTCCTGCATTCAATTTCCTGGATGCT
CCTGCTGTTCGTGTCACTGGTGCTGATGTCCCTATGCCTTATGCAAAGATTCTGGAAGACAACTCTATACCTCAGGTCAA
AGACATCATATTTGCAATAAAGAAAACATTAAATATTTAG

Library Parental gene expression (RPM)
SRP051959_spleen 9 .98 RPM
SRP051959_skeletal_muscle 29 .13 RPM
SRP051959_lymph_node 10 .46 RPM
SRP051959_lung 9 .30 RPM
SRP051959_liver 32 .14 RPM
SRP051959_kidney 24 .09 RPM
SRP051959_heart 28 .19 RPM
SRP051959_colon 8 .61 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000021724 ortholog_one2one 1 retrogene
retro_btau_596,
Canis familiaris ENSCAFG00000007340 ortholog_one2many 2 retrogenes
retro_cfam_1215, retro_cfam_2031,
Dasypus novemcinctus ENSDNOG00000006937 ortholog_one2one 1 retrogene
retro_dnov_1090,
Monodelphis domestica ENSMODG00000002398 ortholog_one2one 1 retrogene
retro_mdom_614,
Mus musculus ENSMUSG00000021748 ortholog_one2one 1 retrogene
retro_mmus_290,
Oryctolagus cuniculus ENSOCUG00000015632 ortholog_one2many 1 retrogene
retro_ocun_342,
Procavia capensis ENSPCAG00000016595 ortholog_one2one 1 retrogene
retro_pcap_261,
Sarcophilus harrisii ENSSHAG00000008480 ortholog_one2many 1 retrogene
retro_shar_5,
Ictidomys tridecemlineatus ENSSTOG00000019553 ortholog_one2one 2 retrogenes
retro_itri_1349, retro_itri_249,
Tupaia belangeri ENSTBEG00000016148 ortholog_one2one 2 retrogenes
retro_tbel_1651, retro_tbel_3170,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_3875 94.44 100.00
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Download FASTA sequences of all ENSCJAG00000019739 retrocopies