Parental gene: | ENSCAFG00000007340 |
| Aliases: | None |
| Description: | None |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 20:32185535..32191199(+) |
>ENSCAFG00000007340
ATGGCGGCGGTGTCTGGCCTGATGCGGAGACCCCTGGAACAGGTGTCGGGGTTGCTGAGGAGGCGCTTCCACCGGACGGC
GCCGGCGGCGCTGCAGGTGACAGTTCGTGAGGCTATAAACCAAGGTATGGATGAAGAGCTGGAAAGAGATGAGAAGGTAT
TTCTCCTTGGGGAAGAAGTTGCCCAGTATGATGGTGCATATAAGGTTAGTCGAGGCCTGTGGAAGAAATATGGCGATAAG
AGAATCATAGATACTCCCATATCTGAGATGGGCTTTGCTGGAATTGCTGTGGGTGCAGCTATGGCTGGGTTGAGGCCCAT
CTGTGAATTTATGACCTTCAATTTCTCTATGCAAGCCATTGACCAAGTTATAAATTCAGCTGCCAAGACCTACTACATGT
CGGGGGGCCTTCAGCCTGTGCCTATAGTCTTCAGGGGGCCCAATGGTGCCTCAGCAGGTGTGGCTGCCCAACACTCACAG
TGCTTTGCTGCCTGGTATGGGCACTGCCCAGGCTTAAAGGTGGTCAGCCCCTGGAATTCAGAGGATGCAAAAGGACTTAT
TAAATCAGCCATTCGGGATAATAATCCAGTGGTGGTGCTAGAGAACGAACTGATGTATGGAGTTCCTTTTGAATTTCCCT
CCGAAGCTCAGTCAAAAGATTTTCTGATTCCCATTGGAAAAGCCAAAATAGAAAGGCAAGGTACACACATAACTGTAGTT
GCTCATTCAAGACCTGTGGGCCACTGCTTAGAAGCTGCAACAGTGTTATCCAAAGAGGGTATTGAATGTGAGGTGATAAA
TATGCGAACCATCAGACCAATGGACATTGAAACAATAGAAGCCAGTGTCATGAAGACCAATCATCTCATAACTGTGGAAG
GAGGCTGGCCACAGTTTGGAGTAGGAGCTGAAATTTGTGCCAGGATTATGGAAGGCCCTGCATTCAATTTCCTGGATGCT
CCTGCAGTTCGTGTCACTGGTGCTGATGTCCCTATGCCTTATGCAAAGATTCTAGAAGACAACTCTGTACCTCAAGTTAA
AGACATCATATTTGCAATAAAGAAAACATTAAATATCTAG
ATGGCGGCGGTGTCTGGCCTGATGCGGAGACCCCTGGAACAGGTGTCGGGGTTGCTGAGGAGGCGCTTCCACCGGACGGC
GCCGGCGGCGCTGCAGGTGACAGTTCGTGAGGCTATAAACCAAGGTATGGATGAAGAGCTGGAAAGAGATGAGAAGGTAT
TTCTCCTTGGGGAAGAAGTTGCCCAGTATGATGGTGCATATAAGGTTAGTCGAGGCCTGTGGAAGAAATATGGCGATAAG
AGAATCATAGATACTCCCATATCTGAGATGGGCTTTGCTGGAATTGCTGTGGGTGCAGCTATGGCTGGGTTGAGGCCCAT
CTGTGAATTTATGACCTTCAATTTCTCTATGCAAGCCATTGACCAAGTTATAAATTCAGCTGCCAAGACCTACTACATGT
CGGGGGGCCTTCAGCCTGTGCCTATAGTCTTCAGGGGGCCCAATGGTGCCTCAGCAGGTGTGGCTGCCCAACACTCACAG
TGCTTTGCTGCCTGGTATGGGCACTGCCCAGGCTTAAAGGTGGTCAGCCCCTGGAATTCAGAGGATGCAAAAGGACTTAT
TAAATCAGCCATTCGGGATAATAATCCAGTGGTGGTGCTAGAGAACGAACTGATGTATGGAGTTCCTTTTGAATTTCCCT
CCGAAGCTCAGTCAAAAGATTTTCTGATTCCCATTGGAAAAGCCAAAATAGAAAGGCAAGGTACACACATAACTGTAGTT
GCTCATTCAAGACCTGTGGGCCACTGCTTAGAAGCTGCAACAGTGTTATCCAAAGAGGGTATTGAATGTGAGGTGATAAA
TATGCGAACCATCAGACCAATGGACATTGAAACAATAGAAGCCAGTGTCATGAAGACCAATCATCTCATAACTGTGGAAG
GAGGCTGGCCACAGTTTGGAGTAGGAGCTGAAATTTGTGCCAGGATTATGGAAGGCCCTGCATTCAATTTCCTGGATGCT
CCTGCAGTTCGTGTCACTGGTGCTGATGTCCCTATGCCTTATGCAAAGATTCTAGAAGACAACTCTGTACCTCAAGTTAA
AGACATCATATTTGCAATAAAGAAAACATTAAATATCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_brain | 34 .06 RPM |
| SRP017611_kidney | 113 .45 RPM |
| SRP017611_liver | 14 .87 RPM |
| SRP012049_cerebellum | 45 .69 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000021724 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000019739 | ortholog_one2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000006937 | ortholog_one2many | 1 retrogene | |
| Monodelphis domestica | ENSMODG00000002398 | ortholog_one2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000021748 | ortholog_one2many | 1 retrogene | |
| Oryctolagus cuniculus | ENSOCUG00000015632 | ortholog_many2many | 1 retrogene | |
| Procavia capensis | ENSPCAG00000016595 | ortholog_one2many | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000008480 | ortholog_many2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000019553 | ortholog_one2many | 2 retrogenes | |
| Tupaia belangeri | ENSTBEG00000016148 | ortholog_one2many | 2 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_1215 | 87.68 | 98.33 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cfam_2031 | 96.94 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCAFG00000007340 retrocopies