Parental gene:

ENSCAFG00000003222

Aliases:None
Description:None
Organism:Dog (Canis familiaris)
Coordinates:15:4595894..4620335(+)


>ENSCAFG00000003222
ATGGAGACGATCCTGGAGCAGCAGCGGCGGTACCATGAGGAGAAGGAGCGGCTCATGGACGTCATGGCCAAAGAGATGCT
CACTAAGAAGTCCACGCTCCGGGACCAGATCAATTCCGACCACCGCACACGGGCCATGCAGGATAGATATATGGAAGTGA
GTGGGAACCTGCGGGATTTGTATGATGATAAGGATGGGTTACGAAAGGAGGAACTCAATGCCATTTCAGGACCCAATGAA
TTTGCTGAATTTTATAATAGACTCAAGCAAATAAAAGAATTCCATCGGAAACACCCAAATGAGATCTGTGTGCCAATGTC
AGTGGAATTTGAGGAGCTTCTGAAAGCTCGAGAGAATCCAAGTGAAGAGGCACAAAACTTGGTGGAGTTCACAGATGAAG
AGGGATATGGTCGTTACCTCGACCTCCATGACTGTTACCTCAAATATATTAATCTCAAGGCCTCAGAGAAACTGGATTAT
ATTACCTATCTGTCTATCTTCGACCAGTTATTTGACATTCCTAAAGAGAGGAAAAATGCTGAATATAAGAGATACCTGGA
GATGCTGCTTGAGTACCTTCAAGATTACACAGATCGAGTCAAGCCCCTCCAAGATCAGAACGAACTTTTTGGGAAGATTC
AGAATGAATTTGAGAAGAAGTGGGAGAATGGTACCTTTCCTGGATGGCCGAAAGAGACAAGCAGTGCCCTGACCCATGCT
GGAGCCCATCTTGACCTGTCTGCATTCTCTTCTTGGGAGGAGTTGGCCTCCCTGGGTCTGGACAGATTGAAATCTGCACT
CTTAGCTCTAGGCTTGAAGTGTGGTGGGACCCTAGAAGAGCGAGCCCAGAGGCTCTTCAGCACCAAAGGAAAGTCCCTGG
AGTCACTTGACACCTCCCTGTTTGCCAAAAATCCCAAGTCAAAAGGCACCAAGCGAGACACTGAGAGGAACAAAGACATT
GCCTTCCTAGAAGCCCAAATCTATGAATATGTAGAGATTCTTGGGGAACAGCGGCATCTCACACATGAAAATGTACAACG
CAAGCAGGCGAGGACAGGGGAGGAACGAGAAGAAGAAGAGGAAGAGCAGATCAGTGAGAGTGAAAGTGAAGATGAGGAGA
ATGAGATCATTTACAACCCCAAAAACCTGCCCCTCGGCTGGGATGGCAAACCTATTCCCTACTGGCTGTACAAGCTTCAT
GGTCTAAACATCAACTATAACTGTGAGATTTGTGGAAATTACACGTACCGAGGTCCCAAGGCCTTCCAGCGGCACTTTGC
TGAGTGGCGTCATGCCCACGGCATGAGGTGTTTGGGCATCCCAAACACTGCCCACTTCGCTAATGTGACACAGATCGAAG
ATGCTGTCTCCTTGTGGGCCAAGCTGAAACTGCAGAAGGCATCAGAGCGATGGCAGCCTGACACCGAGGAAGAATATGAA
GACTCCAGCGGGAACGTGGTGAATAAGAAGACCTATGAGGACCTGAAGAGACAAGGACTGCTCTAG

Library Parental gene expression (RPM)
SRP017611_brain 13 .58 RPM
SRP017611_kidney 19 .08 RPM
SRP017611_liver 7 .32 RPM
SRP012049_cerebellum 18 .31 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001262 ortholog_one2many 1 retrogene
retro_amel_485,
Callithrix jacchus ENSCJAG00000002176 ortholog_one2many 1 retrogene
retro_cjac_4109,
Cavia porcellus ENSCPOG00000008660 ortholog_one2many 1 retrogene
retro_cpor_658,
Homo sapiens ENSG00000183431 ortholog_one2many 2 retrogenes
retro_hsap_2441, retro_hsap_937,
Macropus eugenii ENSMEUG00000002534 ortholog_one2many 3 retrogenes
retro_meug_1135, retro_meug_1346, retro_meug_642,
Macaca mulatta ENSMMUG00000023199 ortholog_one2many 1 retrogene
retro_mmul_631,
Monodelphis domestica ENSMODG00000017729 ortholog_many2many 1 retrogene
retro_mdom_269,
Nomascus leucogenys ENSNLEG00000011720 ortholog_one2many 1 retrogene
retro_nleu_2775,
Pan troglodytes ENSPTRG00000000559 ortholog_one2many 2 retrogenes
retro_ptro_1411, retro_ptro_649,
Sorex araneus ENSSARG00000014204 ortholog_one2many 1 retrogene
retro_sara_407,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_176 100.00 100.00
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Download FASTA sequences of all ENSCAFG00000003222 retrocopies