RetrogeneDB ID: | retro_meug_1346 | ||
Retrocopylocation | Organism: | Wallaby (Macropus eugenii) | |
Coordinates: | Scaffold375992:1108..1632(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SF3A3 | ||
Ensembl ID: | ENSMEUG00000002534 | ||
Aliases: | None | ||
Description: | splicing factor 3a, subunit 3, 60kDa [Source:HGNC Symbol;Acc:10767] |
Percent Identity: | 72.32 % |
Parental protein coverage: | 52.54 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VPMSVEFEELLKARENP-SEEAQNLVEFTDEEGYGRYLDLHDCYLKYINLKASEKLDYITYLSIFDQLFD |
VPMS.EFEELLK....P.SE.AQ.LVE.TDEEGY..YL.LHDC.LKYINLK.SEKLD...Y.SI..Q.FD | |
Retrocopy | VPMSLEFEELLKSKADP<SEKAQPLVEPTDEEGYDLYLNLHDCSLKYINLKVSEKLDGTMYSSILAQIFD |
Parental | IPKERKNAEYKRYLEMLLEYLQDYTDRVKPLQDQNELFGKIQNEFEKKWDNGTFPGWPKETSSALTHAGA |
..KERK.AEYKRYLE.LLE.LQ...DRV.PLQDQNEL.GKIQNEFEK.W..GT..GWP..TSS.LTH.G. | |
Retrocopy | MLKERKSAEYKRYLEILLEHLQNFRDRVNPLQDQNELLGKIQNEFEK-WNDGTLLGWPEGTSSSLTHTGT |
Parental | HLDLSAFSSWEELASLGLDRLKSALLALGLKCGGTLE |
HLDL.AFS.WE..ASLGLDRLKSALLALG.K..GT.E | |
Retrocopy | HLDLAAFSCWEKVASLGLDRLKSALLALGVKYVGTVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000001262 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000003222 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002176 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000008660 | 1 retrocopy | |
Homo sapiens | ENSG00000183431 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000002534 | 3 retrocopies |
retro_meug_1135, retro_meug_1346 , retro_meug_642,
|
Macaca mulatta | ENSMMUG00000023199 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000017729 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000011720 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000559 | 2 retrocopies | |
Sorex araneus | ENSSARG00000014204 | 1 retrocopy |