Parental gene:

SF3A3, ENSPTRG00000000559

Aliases:None
Description:Pan troglodytes splicing factor 3a, subunit 3, 60kDa (SF3A3), mRNA. [Source:RefSeq mRNA;Acc:NM_001246453]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:1:38192379..38225932(-)


>ENSPTRG00000000559
ATGGAGACAATACTGGAGCAGCAGCGGCGCTATCATGAGGAGAAGGAACGGCTCATGGACGTCATGGCTAAAGAGATGCT
CACCAAGAAGTCCACGCTCCGGGACCAGATCAATTCTGATCACCGCACTCGGGCCATGCAAGATAGGTATATGGAGGTCA
GTGGGAACCTGAGGGATTTGTATGATGATAAGGATGGATTACGAAAGGAGGAGCTCAATGCCATTTCAGGACCCAATGAG
TTTGCTGAATTCTATAATAGACTCAAGCAAATAAAGGAATTCCACCGGAAGCACCCAAATGAGATCTGTGTGCCAATGTC
AGTGGAATTTGAGGAACTCCTGAAGGCTCGAGAGAATCCAAGTGAAGAGGCACAAAACTTGGTGGAGTTCACAGATGAAG
AGGGATATGGTCGTTATCTCGATCTCCATGACTGTTACCTCAAGTACATTAACCTGAAGGCATCTGAGAAGCTGGATTAT
ATCACATACCTGTCCATCTTTGACCAATTATTTGACATTCCTAAAGAAAGGAAGAATGCAGAGTATAAGAGATACCTAGA
GATGCTGCTTGAGTACCTTCAGGATTACACAGATAGAGTGAAGCCTCTCCAAGATCAGAATGAACTTTTTGGGAAGATTC
AGGCTGAGTTTGAGAAGAAATGGGAGAATGGGACCTTTCCTGGATGGCCGAAAGAGACAAGCAGTGCCCTGACCCATGCT
GGAGCCCATCTTGACCTCTCTGCATTCTCCTCCTGGGAGGAGTTGGCCTCTCTGGGTTTGGACAGATTGAAATCTGCTCT
CTTAGCTTTAGGCTTGAAATGTGGCGGGACCCTAGAAGAGCGAGCCCAGAGACTATTCAGTACCAAAGGAAAGTCCCTGG
AGTCACTTGATACCTCTTTGTTTGCCAAAAATCCCAAGTCAAAGGGCACCAAGCGAGACACTGAAAGGAACAAAGACATT
GCTTTTCTAGAAGCCCAGATCTATGAATATGTAGAGATTCTCGGGGAACAGCGACATCTCACTCATGAAAATGTACAGCG
CAAGCAAGCCAGGACAGGAGAAGAGCGAGAAGAAGAGGAAGAAGAGCAGATCAGTGAGAGTGAGAGTGAAGATGAAGAGA
ACGAGATCATTTACAACCCCAAAAACCTGCCACTTGGCTGGGATGGCAAACCTATTCCCTACTGGCTGTATAAGCTTCAT
GGCCTAAATATCAACTACAACTGTGAGATTTGTGGAAACTACACCTACCGAGGGCCCAAAGCCTTCCAGCGACACTTTGC
TGAATGGCGTCATGCTCATGGCATGAGGTGTTTGGGCATCCCAAACACTGCTCACTTTGCTAATGTGACACAGATTGAAG
ATGCTGTCTCCTTGTGGGCCAAACTGAAATTGCAGAAGGCTTCAGAACGATGGCAGCCTGACACTGAGGAAGAATATGAA
GACTCAAGTGGGAATGTTGTGAATAAGAAGACATACGAGGATCTGAAAAGACAAGGACTGCTCTAG

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 34 .00 RPM
SRP007412_cerebellum 60 .58 RPM
SRP007412_heart 33 .23 RPM
SRP007412_kidney 49 .79 RPM
SRP007412_liver 38 .95 RPM
SRP007412_testis 142 .48 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000001262 ortholog_one2one 1 retrogene
retro_amel_485,
Canis familiaris ENSCAFG00000003222 ortholog_one2many 1 retrogene
retro_cfam_176,
Callithrix jacchus ENSCJAG00000002176 ortholog_one2one 1 retrogene
retro_cjac_4109,
Cavia porcellus ENSCPOG00000008660 ortholog_one2one 1 retrogene
retro_cpor_658,
Homo sapiens ENSG00000183431 ortholog_one2one 2 retrogenes
retro_hsap_2441, retro_hsap_937,
Macropus eugenii ENSMEUG00000002534 ortholog_one2one 3 retrogenes
retro_meug_1135, retro_meug_1346, retro_meug_642,
Macaca mulatta ENSMMUG00000023199 ortholog_one2one 1 retrogene
retro_mmul_631,
Monodelphis domestica ENSMODG00000017729 ortholog_one2many 1 retrogene
retro_mdom_269,
Nomascus leucogenys ENSNLEG00000011720 ortholog_one2one 1 retrogene
retro_nleu_2775,
Sorex araneus ENSSARG00000014204 ortholog_one2one 1 retrogene
retro_sara_407,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_649 90.16 86.83
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2. retro_ptro_1411 89.68 66.87
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Download FASTA sequences of all ENSPTRG00000000559 retrocopies