Parental gene:

CKAP2, ENSCAFG00000005898

Aliases:None
Description:cytoskeleton associated protein 2 [Source:HGNC Symbol;Acc:1990]
Organism:Dog (Canis familiaris)
Coordinates:25:135616..150797(-)


>ENSCAFG00000005898
ATGAGCGGCCCAGCCGTGCCCCAGGAGCTGCGGCTGCCCCCGAGCCAGAGCCCTCAGCCCGCGTTCAGAGAACAAAAACA
AAAACTCAAGGAACGGATGTTACAAAGAAAAACGTTTTTTGCATATAAACAGGAAAATCATATATCCAGTAGTACAGGCC
AGAAAGTGATGAACTCTGAAGGCCAGATCCAGGAAGAGACAAAAGTTCTGAAATTCAAAACAAAAATGGCTGGTAAAGAA
AATGTCAGTAGACTTCCTGTGAACAAAAATAATATAACTATGGGGAAAAATTGTATTCCTTTAAGACCTTCTAATGAATT
AGCCAATTTAACAATGATAATTGACACACATAATTTGGAGGATAATAATCACACAAGACAGTCGGTACCAATTGAAGATG
GCCCTCAAAGTCAACACATGACATTGAGCCAAATGTTTCATCTTAAAAACAACAGTAAAAAGAAACAAATATCTACAGAA
AAACCAAAGCAAGATGCTAACATGCCTAAGAAGCTTGTGCTTGGGTCTTACAATGGTCAAATTGTTCAATCTAAGATTAA
TTCATTTAGAAAGCCCCTACCAGTCAGAGATGAGAGTTCTGTAGCAACAAAGAAACTTTCAGCTACTATCCCTAAAGCCC
CAGAGCCTCTGCCCGCAGACACCAGCAGTTTCACAGTGAGAAGTCACAGAGCCCCAAACGTGATGACCACCACTCGACCT
GTGAGCACTGCCTCTCAGGACAGACGGCTGGTGCGGCCTCCTATCAGAAGTCACTGCAACAGTGCTCAGGACCCTGTGAA
ACAAGGCATCAGGAGAAGTCTTACAATCCGGAAAGGGCCTCAGGAGAAGGAATTACTGCAATTAAACACAGTTTCATCTA
GTGCCAAAACCAGTTCTCAGGATGTGGAGAGAAAGACGACAGTGTCAAGAAGCCTGATGTCCAAAATTGTAGCCAGACCT
GCTTCATCTTTTAACACCAGACTGATCCAGAAGTCAAAAAGCATTGACCCTTGCAGACACTCTGTAGCAAAAGCAACTAT
TGATAGATCAATTCATCCCAAAGAAACAGCAGAAGAGAGAAAAGCTCGTCTGAGTGAGTGGAAAGCTAGCAAAAGAAAAA
TGATAAAAAGACCTCCTAGCTCAGGAGTTACCCAGTCTGAGCCCGAAGGGCGAAATGAAAAATCATCTGGGTCCTTCTGG
ACTACCATGGTAGAAGAAGATGAGCAAAGATTATTTACTGAAAAAGTGAACAAGACATTTTCTGAATGCCTAAATCTGAT
TAATGAGGGATGCCCAAAAGAAGAAATATTAGTCATACTCAATGACCTGATTAAAGATATTCCAGATGCTAAAAAACTTG
TTAAATATTGGATATGCCTTGCACGTATTGAACCACTCACAAGTCCTATTGAAAATATCATCACAATCTATGAGAAAGCT
ATTTTGGCAGGGGCTCAGAAAATTAAGCCTATCGAAGAAATGCGACATGTAATTGCAGATATTTTAACAATGAAGAGTCA
AGAAAAAGTCAAATATGGAGAAAATGTTGAGGCTTGTGCAACCAAGGAATACATCCAGGATGTCAGCAGTGAAGATATAG
GTGTTAATCTAGAGTCAGGAAAACCAGAAACGGAAAAGAAACCTAGAAATGTGGTATTTCAAGATGATGAAAAAAAGCAA
GATGACAAAACAAAGTATCTAACCAATGATGTTAAAACCCCCAGTGCAGAAACTGGAGGGAGTTGCTTAATTAAATATAA
TGTGTCTACTACACCATACCTACAAAGTATAAAAAAGAAGATACAGTTTGACAATACAGATTCTACATTTAAAGAGCTAA
AGTTTCTAACACCAGTTAGACGTTCTCAACGTATTCAAGAGAAAACTTCTAAATTGCCAGATATGTTAAAAGACCATTAT
CCATGTGTGTCTTCACTGGAGCAGTTAACAGAGTTGGGAGGTGAAACTGATGTTTTTGTATGCCGTCCTAACACAGCCCT
ATGCCCGATGTACTCAGAGACTGGAACAGCA

Library Parental gene expression (RPM)
SRP017611_brain 8 .97 RPM
SRP017611_kidney 3 .24 RPM
SRP017611_liver 0 .73 RPM
SRP012049_cerebellum 19 .03 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000007242 within_species_paralog 1 retrogene
retro_cfam_858,
Choloepus hoffmanni ENSCHOG00000009905 ortholog_one2one 2 retrogenes
retro_chof_1493, retro_chof_973,
Cavia porcellus ENSCPOG00000012382 ortholog_one2many 1 retrogene
retro_cpor_171,
Felis catus ENSFCAG00000010021 ortholog_one2many 1 retrogene
retro_fcat_1770,
Myotis lucifugus ENSMLUG00000000132 ortholog_one2many 1 retrogene
retro_mluc_1515,
Monodelphis domestica ENSMODG00000010436 ortholog_one2many 1 retrogene
retro_mdom_1364,
Mustela putorius furo ENSMPUG00000017996 ortholog_one2one 1 retrogene
retro_mputfur_1270,
Mus musculus ENSMUSG00000037725 ortholog_one2one 1 retrogene
retro_mmus_2651,
Otolemur garnettii ENSOGAG00000008428 ortholog_one2one 1 retrogene
retro_ogar_1743,
Tupaia belangeri ENSTBEG00000005807 ortholog_one2one 1 retrogene
retro_tbel_176,
Tursiops truncatus ENSTTRG00000009624 ortholog_one2one 2 retrogenes
retro_ttru_1491, retro_ttru_1741,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_968 82.60 76.22
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Download FASTA sequences of all ENSCAFG00000005898 retrocopies